These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

157 related articles for article (PubMed ID: 17568009)

  • 1. Detection of DNA structural motifs in functional genomic elements.
    Greenbaum JA; Parker SC; Tullius TD
    Genome Res; 2007 Jun; 17(6):940-6. PubMed ID: 17568009
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Computational characterization of chromatin domain boundary-associated genomic elements.
    Hong S; Kim D
    Nucleic Acids Res; 2017 Oct; 45(18):10403-10414. PubMed ID: 28977568
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).
    Crawford GE; Holt IE; Whittle J; Webb BD; Tai D; Davis S; Margulies EH; Chen Y; Bernat JA; Ginsburg D; Zhou D; Luo S; Vasicek TJ; Daly MJ; Wolfsberg TG; Collins FS
    Genome Res; 2006 Jan; 16(1):123-31. PubMed ID: 16344561
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Identification of DNase I hypersensitive sites in the human genome by multiple sequence descriptors.
    Jin YT; Tan Y; Gan ZH; Hao YD; Wang TY; Lin H; Tang B
    Methods; 2024 Sep; 229():125-132. PubMed ID: 38964595
    [TBL] [Abstract][Full Text] [Related]  

  • 5. De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements.
    Schlesinger F; Smith AD; Gingeras TR; Hannon GJ; Hodges E
    Genome Res; 2013 Oct; 23(10):1601-14. PubMed ID: 23811145
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comprehensive identification and analysis of human accelerated regulatory DNA.
    Gittelman RM; Hun E; Ay F; Madeoy J; Pennacchio L; Noble WS; Hawkins RD; Akey JM
    Genome Res; 2015 Sep; 25(9):1245-55. PubMed ID: 26104583
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.
    Sheffield NC; Thurman RE; Song L; Safi A; Stamatoyannopoulos JA; Lenhard B; Crawford GE; Furey TS
    Genome Res; 2013 May; 23(5):777-88. PubMed ID: 23482648
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Use Chou's 5-steps rule to identify DNase I hypersensitive sites via dinucleotide property matrix and extreme gradient boosting.
    Zhang S; Xue T
    Mol Genet Genomics; 2020 Nov; 295(6):1431-1442. PubMed ID: 32685987
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Genome-Wide Identification of Regulatory DNA Elements in Crop Plants.
    Li Z; Wang K
    Methods Mol Biol; 2020; 2072():85-99. PubMed ID: 31541440
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Identification of coupling DNA motif pairs on long-range chromatin interactions in human K562 cells.
    Wong KC; Li Y; Peng C
    Bioinformatics; 2016 Feb; 32(3):321-4. PubMed ID: 26411866
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions.
    Zhang ZD; Paccanaro A; Fu Y; Weissman S; Weng Z; Chang J; Snyder M; Gerstein MB
    Genome Res; 2007 Jun; 17(6):787-97. PubMed ID: 17567997
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome.
    Hon G; Ren B; Wang W
    PLoS Comput Biol; 2008 Oct; 4(10):e1000201. PubMed ID: 18927605
    [TBL] [Abstract][Full Text] [Related]  

  • 13. pDHS-ELM: computational predictor for plant DNase I hypersensitive sites based on extreme learning machines.
    Zhang S; Chang M; Zhou Z; Dai X; Xu Z
    Mol Genet Genomics; 2018 Aug; 293(4):1035-1049. PubMed ID: 29594496
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Multiple collagen I gene regulatory elements have sites of stress-induced DNA duplex destabilization and nuclear scaffold/matrix association potential.
    Mielke C; Christensen MO; Westergaard O; Bode J; Benham CJ; Breindl M
    J Cell Biochem; 2002; 84(3):484-96. PubMed ID: 11813254
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Index and biological spectrum of human DNase I hypersensitive sites.
    Meuleman W; Muratov A; Rynes E; Halow J; Lee K; Bates D; Diegel M; Dunn D; Neri F; Teodosiadis A; Reynolds A; Haugen E; Nelson J; Johnson A; Frerker M; Buckley M; Sandstrom R; Vierstra J; Kaul R; Stamatoyannopoulos J
    Nature; 2020 Aug; 584(7820):244-251. PubMed ID: 32728217
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Disease-associated variants in different categories of disease located in distinct regulatory elements.
    Ma M; Ru Y; Chuang LS; Hsu NY; Shi LS; Hakenberg J; Cheng WY; Uzilov A; Ding W; Glicksberg BS; Chen R
    BMC Genomics; 2015; 16 Suppl 8(Suppl 8):S3. PubMed ID: 26110593
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.
    Sabo PJ; Kuehn MS; Thurman R; Johnson BE; Johnson EM; Cao H; Yu M; Rosenzweig E; Goldy J; Haydock A; Weaver M; Shafer A; Lee K; Neri F; Humbert R; Singer MA; Richmond TA; Dorschner MO; McArthur M; Hawrylycz M; Green RD; Navas PA; Noble WS; Stamatoyannopoulos JA
    Nat Methods; 2006 Jul; 3(7):511-8. PubMed ID: 16791208
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements.
    Wilken MS; Brzezinski JA; La Torre A; Siebenthall K; Thurman R; Sabo P; Sandstrom RS; Vierstra J; Canfield TK; Hansen RS; Bender MA; Stamatoyannopoulos J; Reh TA
    Epigenetics Chromatin; 2015; 8():8. PubMed ID: 25972927
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves.
    Berendzen KW; Stüber K; Harter K; Wanke D
    BMC Bioinformatics; 2006 Nov; 7():522. PubMed ID: 17137509
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome-Wide Identification of Regulatory Sequences Undergoing Accelerated Evolution in the Human Genome.
    Dong X; Wang X; Zhang F; Tian W
    Mol Biol Evol; 2016 Oct; 33(10):2565-75. PubMed ID: 27401230
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.