BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

325 related articles for article (PubMed ID: 17572027)

  • 1. Confounding factors in HGT detection: statistical error, coalescent effects, and multiple solutions.
    Than C; Ruths D; Innan H; Nakhleh L
    J Comput Biol; 2007 May; 14(4):517-35. PubMed ID: 17572027
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Comparing two Bayesian methods for gene tree/species tree reconstruction: simulations with incomplete lineage sorting and horizontal gene transfer.
    Chung Y; Ané C
    Syst Biol; 2011 May; 60(3):261-75. PubMed ID: 21368324
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes.
    Mirkin BG; Fenner TI; Galperin MY; Koonin EV
    BMC Evol Biol; 2003 Jan; 3():2. PubMed ID: 12515582
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A model of horizontal gene transfer and the bacterial phylogeny problem.
    Galtier N
    Syst Biol; 2007 Aug; 56(4):633-42. PubMed ID: 17661231
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Inferring phylogenetic networks by the maximum parsimony criterion: a case study.
    Jin G; Nakhleh L; Snir S; Tuller T
    Mol Biol Evol; 2007 Jan; 24(1):324-37. PubMed ID: 17068107
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The NET-HMM approach: phylogenetic network inference by combining maximum likelihood and Hidden Markov Models.
    Snir S; Tuller T
    J Bioinform Comput Biol; 2009 Aug; 7(4):625-44. PubMed ID: 19634195
    [TBL] [Abstract][Full Text] [Related]  

  • 7. What is the danger of the anomaly zone for empirical phylogenetics?
    Huang H; Knowles LL
    Syst Biol; 2009 Oct; 58(5):527-36. PubMed ID: 20525606
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Detecting highways of horizontal gene transfer.
    Bansal MS; Banay G; Gogarten JP; Shamir R
    J Comput Biol; 2011 Sep; 18(9):1087-114. PubMed ID: 21899418
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Detecting Horizontal Gene Transfer between Closely Related Taxa.
    Adato O; Ninyo N; Gophna U; Snir S
    PLoS Comput Biol; 2015 Oct; 11(10):e1004408. PubMed ID: 26439115
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Horizontal gene transfer in cyanobacterial signature genes.
    Yerrapragada S; Siefert JL; Fox GE
    Methods Mol Biol; 2009; 532():339-66. PubMed ID: 19271195
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Stochastic models for horizontal gene transfer: taking a random walk through tree space.
    Suchard MA
    Genetics; 2005 May; 170(1):419-31. PubMed ID: 15781714
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods.
    Huang H; He Q; Kubatko LS; Knowles LL
    Syst Biol; 2010 Oct; 59(5):573-83. PubMed ID: 20833951
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The net of life: reconstructing the microbial phylogenetic network.
    Kunin V; Goldovsky L; Darzentas N; Ouzounis CA
    Genome Res; 2005 Jul; 15(7):954-9. PubMed ID: 15965028
    [TBL] [Abstract][Full Text] [Related]  

  • 14. On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods.
    Roch S; Warnow T
    Syst Biol; 2015 Jul; 64(4):663-76. PubMed ID: 25813358
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SPRIT: Identifying horizontal gene transfer in rooted phylogenetic trees.
    Hill T; Nordström KJ; Thollesson M; Säfström TM; Vernersson AK; Fredriksson R; Schiöth HB
    BMC Evol Biol; 2010 Feb; 10():42. PubMed ID: 20152048
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.
    Kordi M; Bansal MS
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1077-1090. PubMed ID: 28622673
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Inferring and validating horizontal gene transfer events using bipartition dissimilarity.
    Boc A; Philippe H; Makarenkov V
    Syst Biol; 2010 Mar; 59(2):195-211. PubMed ID: 20525630
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Reconciling gene and genome duplication events: using multiple nuclear gene families to infer the phylogeny of the aquatic plant family Pontederiaceae.
    Ness RW; Graham SW; Barrett SC
    Mol Biol Evol; 2011 Nov; 28(11):3009-18. PubMed ID: 21633114
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers.
    Carstens BC; Knowles LL
    Syst Biol; 2007 Jun; 56(3):400-11. PubMed ID: 17520504
    [TBL] [Abstract][Full Text] [Related]  

  • 20. HGTree: database of horizontally transferred genes determined by tree reconciliation.
    Jeong H; Sung S; Kwon T; Seo M; Caetano-Anollés K; Choi SH; Cho S; Nasir A; Kim H
    Nucleic Acids Res; 2016 Jan; 44(D1):D610-9. PubMed ID: 26578597
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.