189 related articles for article (PubMed ID: 17573364)
1. Boltzmann probability of RNA structural neighbors and riboswitch detection.
Freyhult E; Moulton V; Clote P
Bioinformatics; 2007 Aug; 23(16):2054-62. PubMed ID: 17573364
[TBL] [Abstract][Full Text] [Related]
2. RNAbor: a web server for RNA structural neighbors.
Freyhult E; Moulton V; Clote P
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W305-9. PubMed ID: 17526527
[TBL] [Abstract][Full Text] [Related]
3. Maximum expected accuracy structural neighbors of an RNA secondary structure.
Clote P; Lou F; Lorenz WA
BMC Bioinformatics; 2012 Apr; 13 Suppl 5(Suppl 5):S6. PubMed ID: 22537010
[TBL] [Abstract][Full Text] [Related]
4. Evaluating the predictability of conformational switching in RNA.
Voss B; Meyer C; Giegerich R
Bioinformatics; 2004 Jul; 20(10):1573-82. PubMed ID: 14962925
[TBL] [Abstract][Full Text] [Related]
5. CONTRAfold: RNA secondary structure prediction without physics-based models.
Do CB; Woods DA; Batzoglou S
Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
[TBL] [Abstract][Full Text] [Related]
6. Rfold: an exact algorithm for computing local base pairing probabilities.
Kiryu H; Kin T; Asai K
Bioinformatics; 2008 Feb; 24(3):367-73. PubMed ID: 18056736
[TBL] [Abstract][Full Text] [Related]
7. Memory efficient folding algorithms for circular RNA secondary structures.
Hofacker IL; Stadler PF
Bioinformatics; 2006 May; 22(10):1172-6. PubMed ID: 16452114
[TBL] [Abstract][Full Text] [Related]
8. RNA structure alignment by a unit-vector approach.
Capriotti E; Marti-Renom MA
Bioinformatics; 2008 Aug; 24(16):i112-8. PubMed ID: 18689811
[TBL] [Abstract][Full Text] [Related]
9. Predicting a set of minimal free energy RNA secondary structures common to two sequences.
Mathews DH
Bioinformatics; 2005 May; 21(10):2246-53. PubMed ID: 15731207
[TBL] [Abstract][Full Text] [Related]
10. INFO-RNA--a fast approach to inverse RNA folding.
Busch A; Backofen R
Bioinformatics; 2006 Aug; 22(15):1823-31. PubMed ID: 16709587
[TBL] [Abstract][Full Text] [Related]
11. Robust prediction of consensus secondary structures using averaged base pairing probability matrices.
Kiryu H; Kin T; Asai K
Bioinformatics; 2007 Feb; 23(4):434-41. PubMed ID: 17182698
[TBL] [Abstract][Full Text] [Related]
12. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
Reeder J; Giegerich R
Bioinformatics; 2005 Sep; 21(17):3516-23. PubMed ID: 16020472
[TBL] [Abstract][Full Text] [Related]
13. Efficient parameter estimation for RNA secondary structure prediction.
Andronescu M; Condon A; Hoos HH; Mathews DH; Murphy KP
Bioinformatics; 2007 Jul; 23(13):i19-28. PubMed ID: 17646296
[TBL] [Abstract][Full Text] [Related]
14. Secondary structure prediction of interacting RNA molecules.
Andronescu M; Zhang ZC; Condon A
J Mol Biol; 2005 Feb; 345(5):987-1001. PubMed ID: 15644199
[TBL] [Abstract][Full Text] [Related]
15. Comparison of P-RnaPredict and mfold--algorithms for RNA secondary structure prediction.
Wiese KC; Hendriks A
Bioinformatics; 2006 Apr; 22(8):934-42. PubMed ID: 16473869
[TBL] [Abstract][Full Text] [Related]
16. Second eigenvalue of the Laplacian matrix for predicting RNA conformational switch by mutation.
Barash D
Bioinformatics; 2004 Aug; 20(12):1861-9. PubMed ID: 14988109
[TBL] [Abstract][Full Text] [Related]
17. taveRNA: a web suite for RNA algorithms and applications.
Aksay C; Salari R; Karakoc E; Alkan C; Sahinalp SC
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W325-9. PubMed ID: 17488837
[TBL] [Abstract][Full Text] [Related]
18. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
Chen X; He SM; Bu D; Zhang F; Wang Z; Chen R; Gao W
Bioinformatics; 2008 Sep; 24(18):1994-2001. PubMed ID: 18586700
[TBL] [Abstract][Full Text] [Related]
19. ARTS: alignment of RNA tertiary structures.
Dror O; Nussinov R; Wolfson H
Bioinformatics; 2005 Sep; 21 Suppl 2():ii47-53. PubMed ID: 16204124
[TBL] [Abstract][Full Text] [Related]
20. Murlet: a practical multiple alignment tool for structural RNA sequences.
Kiryu H; Tabei Y; Kin T; Asai K
Bioinformatics; 2007 Jul; 23(13):1588-98. PubMed ID: 17459961
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]