220 related articles for article (PubMed ID: 17585050)
1. A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control.
Blouin S; Lafontaine DA
RNA; 2007 Aug; 13(8):1256-67. PubMed ID: 17585050
[TBL] [Abstract][Full Text] [Related]
2. Folding of the lysine riboswitch: importance of peripheral elements for transcriptional regulation.
Blouin S; Chinnappan R; Lafontaine DA
Nucleic Acids Res; 2011 Apr; 39(8):3373-87. PubMed ID: 21169337
[TBL] [Abstract][Full Text] [Related]
3. Solution structure of the K-turn and Specifier Loop domains from the Bacillus subtilis tyrS T-box leader RNA.
Wang J; Nikonowicz EP
J Mol Biol; 2011 Apr; 408(1):99-117. PubMed ID: 21333656
[TBL] [Abstract][Full Text] [Related]
4. Role of lysine binding residues in the global folding of the lysC riboswitch.
Smith-Peter E; Lamontagne AM; Lafontaine DA
RNA Biol; 2015; 12(12):1372-82. PubMed ID: 26403229
[TBL] [Abstract][Full Text] [Related]
5. TRAP-5' stem loop interaction increases the efficiency of transcription termination in the Bacillus subtilis trpEDCFBA operon leader region.
McGraw AP; Bevilacqua PC; Babitzke P
RNA; 2007 Nov; 13(11):2020-33. PubMed ID: 17881743
[TBL] [Abstract][Full Text] [Related]
6. Interplay of 'induced fit' and preorganization in the ligand induced folding of the aptamer domain of the guanine binding riboswitch.
Noeske J; Buck J; Fürtig B; Nasiri HR; Schwalbe H; Wöhnert J
Nucleic Acids Res; 2007; 35(2):572-83. PubMed ID: 17175531
[TBL] [Abstract][Full Text] [Related]
7. Folding of the SAM aptamer is determined by the formation of a K-turn-dependent pseudoknot.
Heppell B; Lafontaine DA
Biochemistry; 2008 Feb; 47(6):1490-9. PubMed ID: 18205390
[TBL] [Abstract][Full Text] [Related]
8. Single-molecule studies of the lysine riboswitch reveal effector-dependent conformational dynamics of the aptamer domain.
Fiegland LR; Garst AD; Batey RT; Nesbitt DJ
Biochemistry; 2012 Nov; 51(45):9223-33. PubMed ID: 23067368
[TBL] [Abstract][Full Text] [Related]
9. Mutational analysis of the purine riboswitch aptamer domain.
Gilbert SD; Love CE; Edwards AL; Batey RT
Biochemistry; 2007 Nov; 46(46):13297-309. PubMed ID: 17960911
[TBL] [Abstract][Full Text] [Related]
10. Structure-guided mutational analysis of gene regulation by the Bacillus subtilis pbuE adenine-responsive riboswitch in a cellular context.
Marcano-Velázquez JG; Batey RT
J Biol Chem; 2015 Feb; 290(7):4464-75. PubMed ID: 25550163
[TBL] [Abstract][Full Text] [Related]
11. Modulation of quaternary structure and enhancement of ligand binding by the K-turn of tandem glycine riboswitches.
Baird NJ; Ferré-D'Amaré AR
RNA; 2013 Feb; 19(2):167-76. PubMed ID: 23249744
[TBL] [Abstract][Full Text] [Related]
12. Tuning riboswitch-mediated gene regulation by rational control of aptamer ligand binding properties.
Rode AB; Endoh T; Sugimoto N
Angew Chem Int Ed Engl; 2015 Jan; 54(3):905-9. PubMed ID: 25470002
[TBL] [Abstract][Full Text] [Related]
13. A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain.
Roth A; Winkler WC; Regulski EE; Lee BW; Lim J; Jona I; Barrick JE; Ritwik A; Kim JN; Welz R; Iwata-Reuyl D; Breaker RR
Nat Struct Mol Biol; 2007 Apr; 14(4):308-17. PubMed ID: 17384645
[TBL] [Abstract][Full Text] [Related]
14. Ligand-dependent folding of the three-way junction in the purine riboswitch.
Stoddard CD; Gilbert SD; Batey RT
RNA; 2008 Apr; 14(4):675-84. PubMed ID: 18268025
[TBL] [Abstract][Full Text] [Related]
15. The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer.
Trausch JJ; Ceres P; Reyes FE; Batey RT
Structure; 2011 Oct; 19(10):1413-23. PubMed ID: 21906956
[TBL] [Abstract][Full Text] [Related]
16. Structural Insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA.
Kang M; Peterson R; Feigon J
Mol Cell; 2009 Mar; 33(6):784-90. PubMed ID: 19285444
[TBL] [Abstract][Full Text] [Related]
17. Analysis of lysine recognition and specificity of the Bacillus subtilis L box riboswitch.
Wilson-Mitchell SN; Grundy FJ; Henkin TM
Nucleic Acids Res; 2012 Jul; 40(12):5706-17. PubMed ID: 22416067
[TBL] [Abstract][Full Text] [Related]
18. Conformational Flexibility and Dynamics of the Internal Loop and Helical Regions of the Kink-Turn Motif in the Glycine Riboswitch by Site-Directed Spin-Labeling.
Esquiaqui JM; Sherman EM; Ye JD; Fanucci GE
Biochemistry; 2016 Aug; 55(31):4295-305. PubMed ID: 27427937
[TBL] [Abstract][Full Text] [Related]
19. Challenges of ligand identification for riboswitch candidates.
Meyer MM; Hammond MC; Salinas Y; Roth A; Sudarsan N; Breaker RR
RNA Biol; 2011; 8(1):5-10. PubMed ID: 21317561
[TBL] [Abstract][Full Text] [Related]
20. Functional roles of a tetraloop/receptor interacting module in a cyclic di-GMP riboswitch.
Fujita Y; Tanaka T; Furuta H; Ikawa Y
J Biosci Bioeng; 2012 Feb; 113(2):141-5. PubMed ID: 22074990
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
