These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. Detecting functional modules in the yeast protein-protein interaction network. Chen J; Yuan B Bioinformatics; 2006 Sep; 22(18):2283-90. PubMed ID: 16837529 [TBL] [Abstract][Full Text] [Related]
3. An ensemble framework for clustering protein-protein interaction networks. Asur S; Ucar D; Parthasarathy S Bioinformatics; 2007 Jul; 23(13):i29-40. PubMed ID: 17646309 [TBL] [Abstract][Full Text] [Related]
4. Functional evaluation of domain-domain interactions and human protein interaction networks. Schlicker A; Huthmacher C; Ramírez F; Lengauer T; Albrecht M Bioinformatics; 2007 Apr; 23(7):859-65. PubMed ID: 17456608 [TBL] [Abstract][Full Text] [Related]
5. Fitting a geometric graph to a protein-protein interaction network. Higham DJ; Rasajski M; Przulj N Bioinformatics; 2008 Apr; 24(8):1093-9. PubMed ID: 18344248 [TBL] [Abstract][Full Text] [Related]
6. CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data. Ma X; Lee H; Wang L; Sun F Bioinformatics; 2007 Jan; 23(2):215-21. PubMed ID: 17098772 [TBL] [Abstract][Full Text] [Related]
7. Biological network mapping and source signal deduction. Brynildsen MP; Wu TY; Jang SS; Liao JC Bioinformatics; 2007 Jul; 23(14):1783-91. PubMed ID: 17495996 [TBL] [Abstract][Full Text] [Related]
8. MMG: a probabilistic tool to identify submodules of metabolic pathways. Sanguinetti G; Noirel J; Wright PC Bioinformatics; 2008 Apr; 24(8):1078-84. PubMed ID: 18292114 [TBL] [Abstract][Full Text] [Related]
9. Structural comparison of metabolic networks in selected single cell organisms. Zhu D; Qin ZS BMC Bioinformatics; 2005 Jan; 6():8. PubMed ID: 15649332 [TBL] [Abstract][Full Text] [Related]
10. Functional topology in a network of protein interactions. Przulj N; Wigle DA; Jurisica I Bioinformatics; 2004 Feb; 20(3):340-8. PubMed ID: 14960460 [TBL] [Abstract][Full Text] [Related]
11. Combining multisource information through functional-annotation-based weighting: gene function prediction in yeast. Ray SS; Bandyopadhyay S; Pal SK IEEE Trans Biomed Eng; 2009 Feb; 56(2):229-36. PubMed ID: 19272921 [TBL] [Abstract][Full Text] [Related]
12. Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network. Guo Z; Wang L; Li Y; Gong X; Yao C; Ma W; Wang D; Li Y; Zhu J; Zhang M; Yang D; Rao S; Wang J Bioinformatics; 2007 Aug; 23(16):2121-8. PubMed ID: 17545181 [TBL] [Abstract][Full Text] [Related]
13. Globally predicting protein functions based on co-expressed protein-protein interaction networks and ontology taxonomy similarities. Zhu M; Gao L; Guo Z; Li Y; Wang D; Wang J; Wang C Gene; 2007 Apr; 391(1-2):113-9. PubMed ID: 17289301 [TBL] [Abstract][Full Text] [Related]
14. A statistical approach using network structure in the prediction of protein characteristics. Chen PY; Deane CM; Reinert G Bioinformatics; 2007 Sep; 23(17):2314-21. PubMed ID: 17599931 [TBL] [Abstract][Full Text] [Related]
15. Significance analysis of groups of genes in expression profiling studies. Chen JJ; Lee T; Delongchamp RR; Chen T; Tsai CA Bioinformatics; 2007 Aug; 23(16):2104-12. PubMed ID: 17553853 [TBL] [Abstract][Full Text] [Related]
16. A global pathway crosstalk network. Li Y; Agarwal P; Rajagopalan D Bioinformatics; 2008 Jun; 24(12):1442-7. PubMed ID: 18434343 [TBL] [Abstract][Full Text] [Related]
17. Detecting biological associations between genes based on the theory of phase synchronization. Kim CS; Riikonen P; Salakoski T Biosystems; 2008 May; 92(2):99-113. PubMed ID: 18289772 [TBL] [Abstract][Full Text] [Related]
18. Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process. Elo LL; Järvenpää H; Oresic M; Lahesmaa R; Aittokallio T Bioinformatics; 2007 Aug; 23(16):2096-103. PubMed ID: 17553854 [TBL] [Abstract][Full Text] [Related]
19. Integration of genomic data for inferring protein complexes from global protein-protein interaction networks. Zheng H; Wang H; Glass DH IEEE Trans Syst Man Cybern B Cybern; 2008 Feb; 38(1):5-16. PubMed ID: 18270078 [TBL] [Abstract][Full Text] [Related]
20. Functional centrality: detecting lethality of proteins in protein interaction networks. Tew KL; Li XL; Tan SH Genome Inform; 2007; 19():166-77. PubMed ID: 18546514 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]