143 related articles for article (PubMed ID: 17612289)
41. DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy.
Halligan BD; Ruotti V; Twigger SN; Greene AS
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W376-81. PubMed ID: 15980493
[TBL] [Abstract][Full Text] [Related]
42. Shotgun protein sequencing with meta-contig assembly.
Guthals A; Clauser KR; Bandeira N
Mol Cell Proteomics; 2012 Oct; 11(10):1084-96. PubMed ID: 22798278
[TBL] [Abstract][Full Text] [Related]
43. A Cautionary Tale on the Inclusion of Variable Posttranslational Modifications in Database-Dependent Searches of Mass Spectrometry Data.
Svozil J; Baerenfaller K
Methods Enzymol; 2017; 586():433-452. PubMed ID: 28137575
[TBL] [Abstract][Full Text] [Related]
44. High-confidence de novo peptide sequencing using positive charge derivatization and tandem MS spectra merging.
An M; Zou X; Wang Q; Zhao X; Wu J; Xu LM; Shen HY; Xiao X; He D; Ji J
Anal Chem; 2013 May; 85(9):4530-7. PubMed ID: 23536960
[TBL] [Abstract][Full Text] [Related]
45. Quantitation and facilitated de novo sequencing of proteins by isotopic N-terminal labeling of peptides with a fragmentation-directing moiety.
Münchbach M; Quadroni M; Miotto G; James P
Anal Chem; 2000 Sep; 72(17):4047-57. PubMed ID: 10994964
[TBL] [Abstract][Full Text] [Related]
46. Fast tandem mass spectra-based protein identification regardless of the number of spectra or potential modifications examined.
Falkner J; Andrews P
Bioinformatics; 2005 May; 21(10):2177-84. PubMed ID: 15746284
[TBL] [Abstract][Full Text] [Related]
47. Multi-species Identification of Polymorphic Peptide Variants via Propagation in Spectral Networks.
Na S; Payne SH; Bandeira N
Mol Cell Proteomics; 2016 Nov; 15(11):3501-3512. PubMed ID: 27609420
[TBL] [Abstract][Full Text] [Related]
48. An Approach for Peptide Identification by De Novo Sequencing of Mixture Spectra.
Liu Y; Ma B; Zhang K; Lajoie G
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(2):326-336. PubMed ID: 28368810
[TBL] [Abstract][Full Text] [Related]
49. Shotgun protein sequencing by tandem mass spectra assembly.
Bandeira N; Tang H; Bafna V; Pevzner P
Anal Chem; 2004 Dec; 76(24):7221-33. PubMed ID: 15595863
[TBL] [Abstract][Full Text] [Related]
50. Hunting for unexpected post-translational modifications by spectral library searching with tier-wise scoring.
Ma CW; Lam H
J Proteome Res; 2014 May; 13(5):2262-71. PubMed ID: 24661115
[TBL] [Abstract][Full Text] [Related]
51. CHASE, a charge-assisted sequencing algorithm for automated homology-based protein identifications with matrix-assisted laser desorption/ionization time-of-flight post-source decay fragmentation data.
Raucci G; Gabrielli M; Novelli S; Picariello G; Collins SH
J Mass Spectrom; 2005 Apr; 40(4):475-88. PubMed ID: 15712359
[TBL] [Abstract][Full Text] [Related]
52. Spectral profiles, a novel representation of tandem mass spectra and their applications for de novo peptide sequencing and identification.
Kim S; Bandeira N; Pevzner PA
Mol Cell Proteomics; 2009 Jun; 8(6):1391-400. PubMed ID: 19254948
[TBL] [Abstract][Full Text] [Related]
53. Protein Identification from Tandem Mass Spectra by Database Searching.
Edwards NJ
Methods Mol Biol; 2017; 1558():357-380. PubMed ID: 28150247
[TBL] [Abstract][Full Text] [Related]
54. Clustering millions of tandem mass spectra.
Frank AM; Bandeira N; Shen Z; Tanner S; Briggs SP; Smith RD; Pevzner PA
J Proteome Res; 2008 Jan; 7(1):113-22. PubMed ID: 18067247
[TBL] [Abstract][Full Text] [Related]
55. Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometry.
Taylor JA; Johnson RS
Anal Chem; 2001 Jun; 73(11):2594-604. PubMed ID: 11403305
[TBL] [Abstract][Full Text] [Related]
56. Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries.
Frewen BE; Merrihew GE; Wu CC; Noble WS; MacCoss MJ
Anal Chem; 2006 Aug; 78(16):5678-84. PubMed ID: 16906711
[TBL] [Abstract][Full Text] [Related]
57. Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing.
Waridel P; Frank A; Thomas H; Surendranath V; Sunyaev S; Pevzner P; Shevchenko A
Proteomics; 2007 Jul; 7(14):2318-29. PubMed ID: 17623296
[TBL] [Abstract][Full Text] [Related]
58. De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation.
Bertsch A; Leinenbach A; Pervukhin A; Lubeck M; Hartmer R; Baessmann C; Elnakady YA; Müller R; Böcker S; Huber CG; Kohlbacher O
Electrophoresis; 2009 Nov; 30(21):3736-47. PubMed ID: 19862751
[TBL] [Abstract][Full Text] [Related]
59. An algorithm for interpretation of low-energy collision-induced dissociation product ion spectra for de novo sequencing of peptides.
Zhong H; Li L
Rapid Commun Mass Spectrom; 2005; 19(8):1084-96. PubMed ID: 15803512
[TBL] [Abstract][Full Text] [Related]
60. The H-index of 'an approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database'.
Washburn MP
J Am Soc Mass Spectrom; 2015 Nov; 26(11):1799-803. PubMed ID: 26091891
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
