349 related articles for article (PubMed ID: 17614590)
1. Understanding stochastic simulations of the smallest genetic networks.
Schultz D; Onuchic JN; Wolynes PG
J Chem Phys; 2007 Jun; 126(24):245102. PubMed ID: 17614590
[TBL] [Abstract][Full Text] [Related]
2. Chemical models of genetic toggle switches.
Warren PB; ten Wolde PR
J Phys Chem B; 2005 Apr; 109(14):6812-23. PubMed ID: 16851767
[TBL] [Abstract][Full Text] [Related]
3. Studying genetic regulatory networks at the molecular level: delayed reaction stochastic models.
Zhu R; Ribeiro AS; Salahub D; Kauffman SA
J Theor Biol; 2007 Jun; 246(4):725-45. PubMed ID: 17350653
[TBL] [Abstract][Full Text] [Related]
4. Eliminating fast reactions in stochastic simulations of biochemical networks: a bistable genetic switch.
Morelli MJ; Allen RJ; Tănase-Nicola S; ten Wolde PR
J Chem Phys; 2008 Jan; 128(4):045105. PubMed ID: 18248012
[TBL] [Abstract][Full Text] [Related]
5. Carriers versus adapters in stochastic sensing.
Braha O; Webb J; Gu LQ; Kim K; Bayley H
Chemphyschem; 2005 May; 6(5):889-92. PubMed ID: 15884071
[No Abstract] [Full Text] [Related]
6. Validation of an algorithm for delay stochastic simulation of transcription and translation in prokaryotic gene expression.
Roussel MR; Zhu R
Phys Biol; 2006 Dec; 3(4):274-84. PubMed ID: 17200603
[TBL] [Abstract][Full Text] [Related]
7. Stochastic kinetics description of a simple transcription model.
Roussel MR; Zhu R
Bull Math Biol; 2006 Oct; 68(7):1681-713. PubMed ID: 16967259
[TBL] [Abstract][Full Text] [Related]
8. Transport of single molecules along the periodic parallel lattices with coupling.
Stukalin EB; Kolomeisky AB
J Chem Phys; 2006 May; 124(20):204901. PubMed ID: 16774378
[TBL] [Abstract][Full Text] [Related]
9. Stochastic and delayed stochastic models of gene expression and regulation.
Ribeiro AS
Math Biosci; 2010 Jan; 223(1):1-11. PubMed ID: 19883665
[TBL] [Abstract][Full Text] [Related]
10. Quasiequilibrium approximation of fast reaction kinetics in stochastic biochemical systems.
Goutsias J
J Chem Phys; 2005 May; 122(18):184102. PubMed ID: 15918689
[TBL] [Abstract][Full Text] [Related]
11. On the origins of approximations for stochastic chemical kinetics.
Haseltine EL; Rawlings JB
J Chem Phys; 2005 Oct; 123(16):164115. PubMed ID: 16268689
[TBL] [Abstract][Full Text] [Related]
12. Transient analysis of stochastic switches and trajectories with applications to gene regulatory networks.
Munsky B; Khammash M
IET Syst Biol; 2008 Sep; 2(5):323-33. PubMed ID: 19045827
[TBL] [Abstract][Full Text] [Related]
13. Distributions for negative-feedback-regulated stochastic gene expression: dimension reduction and numerical solution of the chemical master equation.
Zeron ES; Santillán M
J Theor Biol; 2010 May; 264(2):377-85. PubMed ID: 20144620
[TBL] [Abstract][Full Text] [Related]
14. Mass fluctuation kinetics: capturing stochastic effects in systems of chemical reactions through coupled mean-variance computations.
Gómez-Uribe CA; Verghese GC
J Chem Phys; 2007 Jan; 126(2):024109. PubMed ID: 17228945
[TBL] [Abstract][Full Text] [Related]
15. Effect of reactant size on discrete stochastic chemical kinetics.
Gillespie DT; Lampoudi S; Petzold LR
J Chem Phys; 2007 Jan; 126(3):034302. PubMed ID: 17249866
[TBL] [Abstract][Full Text] [Related]
16. An effective rate equation approach to reaction kinetics in small volumes: theory and application to biochemical reactions in nonequilibrium steady-state conditions.
Grima R
J Chem Phys; 2010 Jul; 133(3):035101. PubMed ID: 20649359
[TBL] [Abstract][Full Text] [Related]
17. Green's-function reaction dynamics: a particle-based approach for simulating biochemical networks in time and space.
van Zon JS; ten Wolde PR
J Chem Phys; 2005 Dec; 123(23):234910. PubMed ID: 16392952
[TBL] [Abstract][Full Text] [Related]
18. Tuning cell differentiation patterns and single cell dynamics by regulating proteins' functionalities in a toggle switch.
Dai X; Healy S; Yli-Harja O; Ribeiro AS
J Theor Biol; 2009 Dec; 261(3):441-8. PubMed ID: 19712686
[TBL] [Abstract][Full Text] [Related]
19. On the kinetic design of transcription.
Höfer T; Rasch MJ
Genome Inform; 2005; 16(1):73-82. PubMed ID: 16362909
[TBL] [Abstract][Full Text] [Related]
20. A targeted reweighting method for accelerating the exploration of high-dimensional configuration space.
Cukier RI; Morillo M
J Chem Phys; 2005 Dec; 123(23):234908. PubMed ID: 16392950
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
