BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

156 related articles for article (PubMed ID: 17620139)

  • 1. Quantitative assessment of relationship between sequence similarity and function similarity.
    Joshi T; Xu D
    BMC Genomics; 2007 Jul; 8():222. PubMed ID: 17620139
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.
    Wilson CA; Kreychman J; Gerstein M
    J Mol Biol; 2000 Mar; 297(1):233-49. PubMed ID: 10704319
    [TBL] [Abstract][Full Text] [Related]  

  • 3. GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes.
    Martin DM; Berriman M; Barton GJ
    BMC Bioinformatics; 2004 Nov; 5():178. PubMed ID: 15550167
    [TBL] [Abstract][Full Text] [Related]  

  • 4. AVID: an integrative framework for discovering functional relationships among proteins.
    Jiang T; Keating AE
    BMC Bioinformatics; 2005 Jun; 6():136. PubMed ID: 15929793
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs.
    Yu H; Luscombe NM; Lu HX; Zhu X; Xia Y; Han JD; Bertin N; Chung S; Vidal M; Gerstein M
    Genome Res; 2004 Jun; 14(6):1107-18. PubMed ID: 15173116
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Using indirect protein interactions for the prediction of Gene Ontology functions.
    Chua HN; Sung WK; Wong L
    BMC Bioinformatics; 2007 May; 8 Suppl 4(Suppl 4):S8. PubMed ID: 17570151
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: application.
    Stevens FJ; Kuemmel C; Babnigg G; Collart FR
    J Mol Recognit; 2005; 18(2):150-7. PubMed ID: 15593246
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Function-dependent clustering of orthologues and paralogues of cyclophilins.
    Galat A
    Proteins; 2004 Sep; 56(4):808-20. PubMed ID: 15281132
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Fast model-based protein homology detection without alignment.
    Hochreiter S; Heusel M; Obermayer K
    Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Benchmarking PSI-BLAST in genome annotation.
    Müller A; MacCallum RM; Sternberg MJ
    J Mol Biol; 1999 Nov; 293(5):1257-71. PubMed ID: 10547299
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: validation.
    Stevens FJ
    J Mol Recognit; 2005; 18(2):139-49. PubMed ID: 15558595
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Prediction of protein subcellular localization.
    Yu CS; Chen YC; Lu CH; Hwang JK
    Proteins; 2006 Aug; 64(3):643-51. PubMed ID: 16752418
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Analysis and prediction of functional sub-types from protein sequence alignments.
    Hannenhalli SS; Russell RB
    J Mol Biol; 2000 Oct; 303(1):61-76. PubMed ID: 11021970
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families.
    Shah PK; Tripathi LP; Jensen LJ; Gahnim M; Mason C; Furlong EE; Rodrigues V; White KP; Bork P; Sowdhamini R
    Gene; 2008 Jan; 407(1-2):199-215. PubMed ID: 17996400
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data.
    Hawkins T; Chitale M; Luban S; Kihara D
    Proteins; 2009 Feb; 74(3):566-82. PubMed ID: 18655063
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction.
    Lei Z; Dai Y
    BMC Bioinformatics; 2006 Nov; 7():491. PubMed ID: 17090318
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Inferring function from homology.
    Emes RD
    Methods Mol Biol; 2008; 453():149-68. PubMed ID: 18712301
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Blast sampling for structural and functional analyses.
    Friedrich A; Ripp R; Garnier N; Bettler E; Deléage G; Poch O; Moulinier L
    BMC Bioinformatics; 2007 Feb; 8():62. PubMed ID: 17319945
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A genetic similarity algorithm for searching the Gene Ontology terms and annotating anonymous protein sequences.
    Othman RM; Deris S; Illias RM
    J Biomed Inform; 2008 Feb; 41(1):65-81. PubMed ID: 17681495
    [TBL] [Abstract][Full Text] [Related]  

  • 20. GO-At: in silico prediction of gene function in Arabidopsis thaliana by combining heterogeneous data.
    Bradford JR; Needham CJ; Tedder P; Care MA; Bulpitt AJ; Westhead DR
    Plant J; 2010 Feb; 61(4):713-21. PubMed ID: 19947983
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.