202 related articles for article (PubMed ID: 17629420)
1. Nature of selective constraints on synonymous codon usage of rice differs in GC-poor and GC-rich genes.
Mukhopadhyay P; Basak S; Ghosh TC
Gene; 2007 Oct; 400(1-2):71-81. PubMed ID: 17629420
[TBL] [Abstract][Full Text] [Related]
2. Rapid divergence of codon usage patterns within the rice genome.
Wang HC; Hickey DA
BMC Evol Biol; 2007 Feb; 7 Suppl 1(Suppl 1):S6. PubMed ID: 17288579
[TBL] [Abstract][Full Text] [Related]
3. Nucleotide substitution pattern in rice paralogues: implication for negative correlation between the synonymous substitution rate and codon usage bias.
Shi X; Wang X; Li Z; Zhu Q; Tang W; Ge S; Luo J
Gene; 2006 Jul; 376(2):199-206. PubMed ID: 16644142
[TBL] [Abstract][Full Text] [Related]
4. Evidence of selectively driven codon usage in rice: implications for GC content evolution of Gramineae genes.
Guo X; Bao J; Fan L
FEBS Lett; 2007 Mar; 581(5):1015-21. PubMed ID: 17306258
[TBL] [Abstract][Full Text] [Related]
5. Selective constraints on codon usage of nuclear genes from Arabidopsis thaliana.
Morton BR; Wright SI
Mol Biol Evol; 2007 Jan; 24(1):122-9. PubMed ID: 17021276
[TBL] [Abstract][Full Text] [Related]
6. [Synonymous codon usage bias in the rice cultivar 93-11 (Oryza sativa L. ssp. indica)].
Liu QP; Tan J; Xue QZ
Yi Chuan Xue Bao; 2003 Apr; 30(4):335-40. PubMed ID: 12812058
[TBL] [Abstract][Full Text] [Related]
7. [Analysis of factors shaping S. pneumoniae codon usage].
Hou ZC; Yang N
Yi Chuan Xue Bao; 2002; 29(8):747-52. PubMed ID: 12200868
[TBL] [Abstract][Full Text] [Related]
8. Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata.
Wright SI; Yau CB; Looseley M; Meyers BC
Mol Biol Evol; 2004 Sep; 21(9):1719-26. PubMed ID: 15201397
[TBL] [Abstract][Full Text] [Related]
9. Complex mutation and weak selection together determined the codon usage bias in bryophyte mitochondrial genomes.
Wang B; Liu J; Jin L; Feng XY; Chen JQ
J Integr Plant Biol; 2010 Dec; 52(12):1100-8. PubMed ID: 21106008
[TBL] [Abstract][Full Text] [Related]
10. Reinvestigating the codon and amino acid usage of S. cerevisiae genome: a new insight from protein secondary structure analysis.
Kahali B; Basak S; Ghosh TC
Biochem Biophys Res Commun; 2007 Mar; 354(3):693-9. PubMed ID: 17258174
[TBL] [Abstract][Full Text] [Related]
11. No evidence for tissue-specific adaptation of synonymous codon usage in humans.
Sémon M; Lobry JR; Duret L
Mol Biol Evol; 2006 Mar; 23(3):523-9. PubMed ID: 16280544
[TBL] [Abstract][Full Text] [Related]
12. Codon bias as a factor in regulating expression via translation rate in the human genome.
Lavner Y; Kotlar D
Gene; 2005 Jan; 345(1):127-38. PubMed ID: 15716084
[TBL] [Abstract][Full Text] [Related]
13. Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae.
Percudani R; Pavesi A; Ottonello S
J Mol Biol; 1997 May; 268(2):322-30. PubMed ID: 9159473
[TBL] [Abstract][Full Text] [Related]
14. Coevolution of codon usage and tRNA genes leads to alternative stable states of biased codon usage.
Higgs PG; Ran W
Mol Biol Evol; 2008 Nov; 25(11):2279-91. PubMed ID: 18687657
[TBL] [Abstract][Full Text] [Related]
15. Differential selective constraints shaping codon usage pattern of housekeeping and tissue-specific homologous genes of rice and arabidopsis.
Mukhopadhyay P; Basak S; Ghosh TC
DNA Res; 2008 Dec; 15(6):347-56. PubMed ID: 18827062
[TBL] [Abstract][Full Text] [Related]
16. Factors affecting codon usage in Yersinia pestis.
Hou ZC; Yang N
Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai); 2003 Jun; 35(6):580-6. PubMed ID: 12796821
[TBL] [Abstract][Full Text] [Related]
17. GC-biased gene conversion and selection affect GC content in the Oryza genus (rice).
Muyle A; Serres-Giardi L; Ressayre A; Escobar J; Glémin S
Mol Biol Evol; 2011 Sep; 28(9):2695-706. PubMed ID: 21504892
[TBL] [Abstract][Full Text] [Related]
18. Synonymous codon usage and gene function are strongly related in Oryza sativa.
Liu Q; Dou S; Ji Z; Xue Q
Biosystems; 2005 May; 80(2):123-31. PubMed ID: 15823411
[TBL] [Abstract][Full Text] [Related]
19. Variable correlation of genome GC% with transfer RNA number as well as with transfer RNA diversity among bacterial groups: alpha-proteobacteria and tenericutes exhibit strong positive correlation.
Satapathy SS; Dutta M; Ray SK
Microbiol Res; 2010 Mar; 165(3):232-42. PubMed ID: 19713091
[TBL] [Abstract][Full Text] [Related]
20. Delving deeper into the unexpected correlation between gene expressivity and codon usage bias of Escherichia coli genome.
Kahali B; Basak S; Ghosh TC
J Biomol Struct Dyn; 2008 Jun; 25(6):655-61. PubMed ID: 18399699
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
