These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

162 related articles for article (PubMed ID: 17652333)

  • 1. On reduced amino acid alphabets for phylogenetic inference.
    Susko E; Roger AJ
    Mol Biol Evol; 2007 Sep; 24(9):2139-50. PubMed ID: 17652333
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Recoding Amino Acids to a Reduced Alphabet may Increase or Decrease Phylogenetic Accuracy.
    Foster PG; Schrempf D; Szöllősi GJ; Williams TA; Cox CJ; Embley TM
    Syst Biol; 2023 Jun; 72(3):723-737. PubMed ID: 35713492
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation.
    Wang HC; Susko E; Roger AJ
    Mol Biol Evol; 2014 Apr; 31(4):779-92. PubMed ID: 24441033
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ProtTest: selection of best-fit models of protein evolution.
    Abascal F; Zardoya R; Posada D
    Bioinformatics; 2005 May; 21(9):2104-5. PubMed ID: 15647292
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Accuracy of sequence alignment and fold assessment using reduced amino acid alphabets.
    Melo F; Marti-Renom MA
    Proteins; 2006 Jun; 63(4):986-95. PubMed ID: 16506243
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Computer System for Analysis of Molecular Evolution Modes (SAMEM): analysis of molecular evolution modes at deep inner branches of the phylogenetic tree.
    Gunbin KV; Suslov VV; Genaev MA; Afonnikov DA
    In Silico Biol; 2011-2012; 11(3-4):109-23. PubMed ID: 22935965
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach.
    Stern A; Doron-Faigenboim A; Erez E; Martz E; Bacharach E; Pupko T
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W506-11. PubMed ID: 17586822
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions.
    Yu YK; Altschul SF
    Bioinformatics; 2005 Apr; 21(7):902-11. PubMed ID: 15509610
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The gene encoding Arabidopsis thaliana mitochondrial ribosomal protein S13 is a recent duplication of the gene encoding plastid S13.
    Mollier P; Hoffmann B; Debast C; Small I
    Curr Genet; 2002 Mar; 40(6):405-9. PubMed ID: 11919680
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants.
    Sanderson MJ; Wojciechowski MF; Hu JM; Khan TS; Brady SG
    Mol Biol Evol; 2000 May; 17(5):782-97. PubMed ID: 10779539
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Phylogenetic and structural analysis of mitochondrial complex I proteins.
    Liò P
    Gene; 2005 Jan; 345(1):55-64. PubMed ID: 15716089
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Local homology recognition and distance measures in linear time using compressed amino acid alphabets.
    Edgar RC
    Nucleic Acids Res; 2004; 32(1):380-5. PubMed ID: 14729922
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Simplifying amino acid alphabets by means of a branch and bound algorithm and substitution matrices.
    Cannata N; Toppo S; Romualdi C; Valle G
    Bioinformatics; 2002 Aug; 18(8):1102-8. PubMed ID: 12176833
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Alignment-free comparison of protein sequences based on reduced amino acid alphabets.
    Jia C; Liu T; Zhang X; Fu H; Yang Q
    J Biomol Struct Dyn; 2009 Jun; 26(6):763-9. PubMed ID: 19385704
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants.
    Sumner JG; Taylor A; Holland BR; Jarvis PD
    J Math Biol; 2017 Dec; 75(6-7):1619-1654. PubMed ID: 28434023
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A 20-state empirical amino-acid substitution model for green plant chloroplasts.
    Cox CJ; Foster PG
    Mol Phylogenet Evol; 2013 Aug; 68(2):218-20. PubMed ID: 23567023
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.
    Scheeff ED; Bourne PE
    BMC Bioinformatics; 2006 Sep; 7():410. PubMed ID: 16970830
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Bayesian inference of phylogeny and its impact on evolutionary biology.
    Huelsenbeck JP; Ronquist F; Nielsen R; Bollback JP
    Science; 2001 Dec; 294(5550):2310-4. PubMed ID: 11743192
    [TBL] [Abstract][Full Text] [Related]  

  • 20. An alternative model of amino acid replacement.
    Crooks GE; Brenner SE
    Bioinformatics; 2005 Apr; 21(7):975-80. PubMed ID: 15531614
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.