BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

229 related articles for article (PubMed ID: 17652781)

  • 1. Understanding antibody-antigen associations by molecular dynamics simulations: detection of important intra- and inter-molecular salt bridges.
    Sinha N; Li Y; Lipschultz CA; Smith-Gill SJ
    Cell Biochem Biophys; 2007; 47(3):361-75. PubMed ID: 17652781
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Differences in electrostatic properties at antibody-antigen binding sites: implications for specificity and cross-reactivity.
    Sinha N; Mohan S; Lipschultz CA; Smith-Gill SJ
    Biophys J; 2002 Dec; 83(6):2946-68. PubMed ID: 12496069
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Modeling the binding sites of anti-hen egg white lysozyme antibodies HyHEL-8 and HyHEL-26: an insight into the molecular basis of antibody cross-reactivity and specificity.
    Mohan S; Sinha N; Smith-Gill SJ
    Biophys J; 2003 Nov; 85(5):3221-36. PubMed ID: 14581222
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Molecular dynamics simulation of a high-affinity antibody-protein complex: the binding site is a mosaic of locally flexible and preorganized rigid regions.
    Sinha N; Smith-Gill SJ
    Cell Biochem Biophys; 2005; 43(2):253-73. PubMed ID: 16049350
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Dissection of binding interactions in the complex between the anti-lysozyme antibody HyHEL-63 and its antigen.
    Li Y; Urrutia M; Smith-Gill SJ; Mariuzza RA
    Biochemistry; 2003 Jan; 42(1):11-22. PubMed ID: 12515535
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.
    Shiroishi M; Yokota A; Tsumoto K; Kondo H; Nishimiya Y; Horii K; Matsushima M; Ogasahara K; Yutani K; Kumagai I
    J Biol Chem; 2001 Jun; 276(25):23042-50. PubMed ID: 11297547
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Binding and dissociation kinetics using fractals: an analysis of electrostatic effects and randomly coupled and oriented coupled receptors on biosensor surfaces.
    Butala HD; Sadana A
    Biosens Bioelectron; 2004 Mar; 19(8):933-44. PubMed ID: 15128113
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Structural differences among monoclonal antibodies with distinct fine specificities and kinetic properties.
    Lavoie TB; Mohan S; Lipschultz CA; Grivel JC; Li Y; Mainhart CR; Kam-Morgan LN; Drohan WN; Smith-Gill SJ
    Mol Immunol; 1999 Dec; 36(17):1189-205. PubMed ID: 10698321
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Estimation of the hydrophobic effect in an antigen-antibody protein-protein interface.
    Sundberg EJ; Urrutia M; Braden BC; Isern J; Tsuchiya D; Fields BA; Malchiodi EL; Tormo J; Schwarz FP; Mariuzza RA
    Biochemistry; 2000 Dec; 39(50):15375-87. PubMed ID: 11112523
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Electrostatics in protein binding and function.
    Sinha N; Smith-Gill SJ
    Curr Protein Pept Sci; 2002 Dec; 3(6):601-14. PubMed ID: 12470214
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Analysis of protein-protein interactions and the effects of amino acid mutations on their energetics. The importance of water molecules in the binding epitope.
    Covell DG; Wallqvist A
    J Mol Biol; 1997 Jun; 269(2):281-97. PubMed ID: 9191071
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Three-dimensional structures of the free and antigen-bound Fab from monoclonal antilysozyme antibody HyHEL-63(,).
    Li Y; Li H; Smith-Gill SJ; Mariuzza RA
    Biochemistry; 2000 May; 39(21):6296-309. PubMed ID: 10828942
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Role of antibody paratope conformational flexibility in the manifestation of molecular mimicry.
    Krishnan L; Sahni G; Kaur KJ; Salunke DM
    Biophys J; 2008 Feb; 94(4):1367-76. PubMed ID: 18032557
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Association energetics of cross-reactive and specific antibodies.
    Mohan S; Kourentzi K; Schick KA; Uehara C; Lipschultz CA; Acchione M; Desantis ME; Smith-Gill SJ; Willson RC
    Biochemistry; 2009 Feb; 48(6):1390-8. PubMed ID: 19166328
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Role of salt bridge formation in antigen-antibody interaction. Entropic contribution to the complex between hen egg white lysozyme and its monoclonal antibody HyHEL10.
    Tsumoto K; Ogasahara K; Ueda Y; Watanabe K; Yutani K; Kumagai I
    J Biol Chem; 1996 Dec; 271(51):32612-6. PubMed ID: 8955089
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A mutational analysis of binding interactions in an antigen-antibody protein-protein complex.
    Dall'Acqua W; Goldman ER; Lin W; Teng C; Tsuchiya D; Li H; Ysern X; Braden BC; Li Y; Smith-Gill SJ; Mariuzza RA
    Biochemistry; 1998 Jun; 37(22):7981-91. PubMed ID: 9609690
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Disruption and formation of surface salt bridges are coupled to DNA binding by the integration host factor: a computational analysis.
    Ma L; Sundlass NK; Raines RT; Cui Q
    Biochemistry; 2011 Jan; 50(2):266-75. PubMed ID: 21121696
    [TBL] [Abstract][Full Text] [Related]  

  • 18. N9 neuraminidase complexes with antibodies NC41 and NC10: empirical free energy calculations capture specificity trends observed with mutant binding data.
    Tulip WR; Harley VR; Webster RG; Novotny J
    Biochemistry; 1994 Jul; 33(26):7986-97. PubMed ID: 7517697
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Exploring the molecular design of protein interaction sites with molecular dynamics simulations and free energy calculations.
    Liang S; Li L; Hsu WL; Pilcher MN; Uversky V; Zhou Y; Dunker AK; Meroueh SO
    Biochemistry; 2009 Jan; 48(2):399-414. PubMed ID: 19113835
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Role of backbone hydration and salt-bridge formation in stability of alpha-helix in solution.
    Ghosh T; Garde S; GarcĂ­a AE
    Biophys J; 2003 Nov; 85(5):3187-93. PubMed ID: 14581218
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.