These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

310 related articles for article (PubMed ID: 17660201)

  • 1. Comparative modeling without implicit sequence alignments.
    Kolinski A; Gront D
    Bioinformatics; 2007 Oct; 23(19):2522-7. PubMed ID: 17660201
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Comparative protein structure modeling by combining multiple templates and optimizing sequence-to-structure alignments.
    Fernandez-Fuentes N; Rai BK; Madrid-Aliste CJ; Fajardo JE; Fiser A
    Bioinformatics; 2007 Oct; 23(19):2558-65. PubMed ID: 17823132
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Modeling protein loops with knowledge-based prediction of sequence-structure alignment.
    Peng HP; Yang AS
    Bioinformatics; 2007 Nov; 23(21):2836-42. PubMed ID: 17827204
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TRACER. A new approach to comparative modeling that combines threading with free-space conformational sampling.
    Trojanowski S; Rutkowska A; Kolinski A
    Acta Biochim Pol; 2010; 57(1):125-33. PubMed ID: 20309433
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Multiple Alignment of protein structures and sequences for VMD.
    Eargle J; Wright D; Luthey-Schulten Z
    Bioinformatics; 2006 Feb; 22(4):504-6. PubMed ID: 16339280
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An evaluation of automated homology modelling methods at low target template sequence similarity.
    Dalton JA; Jackson RM
    Bioinformatics; 2007 Aug; 23(15):1901-8. PubMed ID: 17510171
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PFRES: protein fold classification by using evolutionary information and predicted secondary structure.
    Chen K; Kurgan L
    Bioinformatics; 2007 Nov; 23(21):2843-50. PubMed ID: 17942446
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Generation of 3D templates of active sites of proteins with rigid prosthetic groups.
    Nebel JC
    Bioinformatics; 2006 May; 22(10):1183-9. PubMed ID: 16473871
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS; Honig B
    J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Vorolign--fast structural alignment using Voronoi contacts.
    Birzele F; Gewehr JE; Csaba G; Zimmer R
    Bioinformatics; 2007 Jan; 23(2):e205-11. PubMed ID: 17237093
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Multiple mapping method: a novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling.
    Rai BK; Fiser A
    Proteins; 2006 May; 63(3):644-61. PubMed ID: 16437570
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Searching for three-dimensional secondary structural patterns in proteins with ProSMoS.
    Shi S; Zhong Y; Majumdar I; Sri Krishna S; Grishin NV
    Bioinformatics; 2007 Jun; 23(11):1331-8. PubMed ID: 17384423
    [TBL] [Abstract][Full Text] [Related]  

  • 13. VISTAL--a new 2D visualization tool of protein 3D structural alignments.
    Kolodny R; Honig B
    Bioinformatics; 2006 Sep; 22(17):2166-7. PubMed ID: 16837525
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
    Najmanovich R; Kurbatova N; Thornton J
    Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Automatic Prediction of Protein 3D Structures by Probabilistic Multi-template Homology Modeling.
    Meier A; Söding J
    PLoS Comput Biol; 2015 Oct; 11(10):e1004343. PubMed ID: 26496371
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A new approach to prediction of short-range conformational propensities in proteins.
    Gront D; Kolinski A
    Bioinformatics; 2005 Apr; 21(7):981-7. PubMed ID: 15509604
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Protein structure prediction of CASP5 comparative modeling and fold recognition targets using consensus alignment approach and 3D assessment.
    Ginalski K; Rychlewski L
    Proteins; 2003; 53 Suppl 6():410-7. PubMed ID: 14579329
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Using an alignment of fragment strings for comparing protein structures.
    Friedberg I; Harder T; Kolodny R; Sitbon E; Li Z; Godzik A
    Bioinformatics; 2007 Jan; 23(2):e219-24. PubMed ID: 17237095
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Developing a move-set for protein model refinement.
    Offman MN; Fitzjohn PW; Bates PA
    Bioinformatics; 2006 Aug; 22(15):1838-45. PubMed ID: 16705011
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.
    Kundrotas PJ; Lensink MF; Alexov E
    Int J Biol Macromol; 2008 Aug; 43(2):198-208. PubMed ID: 18572239
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.