154 related articles for article (PubMed ID: 17663795)
41. RNA sequence analysis using covariance models.
Eddy SR; Durbin R
Nucleic Acids Res; 1994 Jun; 22(11):2079-88. PubMed ID: 8029015
[TBL] [Abstract][Full Text] [Related]
42. Sampled ensemble neutrality as a feature to classify potential structured RNAs.
Pei S; Anthony JS; Meyer MM
BMC Genomics; 2015 Feb; 16(1):35. PubMed ID: 25649229
[TBL] [Abstract][Full Text] [Related]
43. Fast filtering for RNA homology search.
Kolbe DL; Eddy SR
Bioinformatics; 2011 Nov; 27(22):3102-9. PubMed ID: 21965818
[TBL] [Abstract][Full Text] [Related]
44. CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.
Hamada M; Sato K; Kiryu H; Mituyama T; Asai K
Bioinformatics; 2009 Dec; 25(24):3236-43. PubMed ID: 19808876
[TBL] [Abstract][Full Text] [Related]
45. PALMA: mRNA to genome alignments using large margin algorithms.
Schulze U; Hepp B; Ong CS; Rätsch G
Bioinformatics; 2007 Aug; 23(15):1892-900. PubMed ID: 17537755
[TBL] [Abstract][Full Text] [Related]
46. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.
Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q
BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252
[TBL] [Abstract][Full Text] [Related]
47. LocalSTAR3D: a local stack-based RNA 3D structural alignment tool.
Chen X; Khan NS; Zhang S
Nucleic Acids Res; 2020 Jul; 48(13):e77. PubMed ID: 32496533
[TBL] [Abstract][Full Text] [Related]
48. RNA secondary structural alignment with conditional random fields.
Sato K; Sakakibara Y
Bioinformatics; 2005 Sep; 21 Suppl 2():ii237-42. PubMed ID: 16204111
[TBL] [Abstract][Full Text] [Related]
49. A new distance for high level RNA secondary structure comparison.
Allali J; Sagot MF
IEEE/ACM Trans Comput Biol Bioinform; 2005; 2(1):3-14. PubMed ID: 17044160
[TBL] [Abstract][Full Text] [Related]
50. Identifying structural noncoding RNAs using RNAz.
Washietl S; Hofacker IL
Curr Protoc Bioinformatics; 2007 Sep; Chapter 12():Unit 12.7. PubMed ID: 18428784
[TBL] [Abstract][Full Text] [Related]
51. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
Ruan J; Stormo GD; Zhang W
Bioinformatics; 2004 Jan; 20(1):58-66. PubMed ID: 14693809
[TBL] [Abstract][Full Text] [Related]
52. Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization.
Bauer M; Klau GW; Reinert K
BMC Bioinformatics; 2007 Jul; 8():271. PubMed ID: 17662141
[TBL] [Abstract][Full Text] [Related]
53. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
Ferrè F; Ponty Y; Lorenz WA; Clote P
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
[TBL] [Abstract][Full Text] [Related]
54. Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences.
Xu Z; Mathews DH
Bioinformatics; 2011 Mar; 27(5):626-32. PubMed ID: 21193521
[TBL] [Abstract][Full Text] [Related]
55. 4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing.
Seibel PN; Müller T; Dandekar T; Schultz J; Wolf M
BMC Bioinformatics; 2006 Nov; 7():498. PubMed ID: 17101042
[TBL] [Abstract][Full Text] [Related]
56. PARTS: probabilistic alignment for RNA joinT secondary structure prediction.
Harmanci AO; Sharma G; Mathews DH
Nucleic Acids Res; 2008 Apr; 36(7):2406-17. PubMed ID: 18304945
[TBL] [Abstract][Full Text] [Related]
57. Statistical inference for well-ordered structures in nucleotide sequences.
Le SY; Chen JH; Maize JV
Proc IEEE Comput Soc Bioinform Conf; 2003; 2():190-6. PubMed ID: 16452793
[TBL] [Abstract][Full Text] [Related]
58. Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures.
Saito Y; Sato K; Sakakibara Y
BMC Bioinformatics; 2011 Feb; 12 Suppl 1(Suppl 1):S48. PubMed ID: 21342580
[TBL] [Abstract][Full Text] [Related]
59. Alignment of RNA base pairing probability matrices.
Hofacker IL; Bernhart SH; Stadler PF
Bioinformatics; 2004 Sep; 20(14):2222-7. PubMed ID: 15073017
[TBL] [Abstract][Full Text] [Related]
60. The art of editing RNA structural alignments.
Andersen ES
Methods Mol Biol; 2014; 1097():379-94. PubMed ID: 24639168
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]