These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

266 related articles for article (PubMed ID: 17664653)

  • 1. Anisotropic atomic motions in high-resolution protein crystallography molecular dynamics simulations.
    Burden CJ; Oakley AJ
    Phys Biol; 2007 Jun; 4(2):79-90. PubMed ID: 17664653
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations.
    Hünenberger PH; Mark AE; van Gunsteren WF
    J Mol Biol; 1995 Sep; 252(4):492-503. PubMed ID: 7563068
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Atomic crystal and molecular dynamics simulation structures of human carbonic anhydrase II: insights into the proton transfer mechanism.
    Fisher SZ; Maupin CM; Budayova-Spano M; Govindasamy L; Tu C; Agbandje-McKenna M; Silverman DN; Voth GA; McKenna R
    Biochemistry; 2007 Mar; 46(11):2930-7. PubMed ID: 17319692
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Effect of crystal freezing and small-molecule binding on internal cavity size in a large protein: X-ray and docking studies of lipoxygenase at ambient and low temperature at 2.0 A resolution.
    Skrzypczak-Jankun E; Borbulevych OY; Zavodszky MI; Baranski MR; Padmanabhan K; Petricek V; Jankun J
    Acta Crystallogr D Biol Crystallogr; 2006 Jul; 62(Pt 7):766-75. PubMed ID: 16790932
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Searching the Cambridge Structural Database for polymorphs.
    van de Streek J; Motherwell S
    Acta Crystallogr B; 2005 Oct; 61(Pt 5):504-10. PubMed ID: 16186651
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Catalytic mechanism of cyclophilin as observed in molecular dynamics simulations: pathway prediction and reconciliation of X-ray crystallographic and NMR solution data.
    Trzesniak D; van Gunsteren WF
    Protein Sci; 2006 Nov; 15(11):2544-51. PubMed ID: 17075133
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Optimal modeling of atomic fluctuations in protein crystal structures for weak crystal contact interactions.
    Hafner J; Zheng W
    J Chem Phys; 2010 Jan; 132(1):014111. PubMed ID: 20078153
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Fluctuations and correlations in crystalline protein dynamics: a simulation analysis of staphylococcal nuclease.
    Meinhold L; Smith JC
    Biophys J; 2005 Apr; 88(4):2554-63. PubMed ID: 15681654
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protein dynamics from X-ray crystallography: anisotropic, global motion in diffuse scattering patterns.
    Meinhold L; Smith JC
    Proteins; 2007 Mar; 66(4):941-53. PubMed ID: 17154425
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Force-field development and molecular dynamics simulations of ferrocene-peptide conjugates as a scaffold for hydrogenase mimics.
    de Hatten X; Cournia Z; Huc I; Smith JC; Metzler-Nolte N
    Chemistry; 2007; 13(29):8139-52. PubMed ID: 17763506
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Temperature dependence of rotational disorder in a non-standard amino acid from X-ray crystallography and molecular dynamics simulation.
    Dittrich B; Warren JE; Fabbiani FP; Morgenroth W; Corry B
    Phys Chem Chem Phys; 2009 Apr; 11(15):2601-9. PubMed ID: 19421516
    [TBL] [Abstract][Full Text] [Related]  

  • 12. All-atom modeling of anisotropic atomic fluctuations in protein crystal structures.
    Hafner J; Zheng W
    J Chem Phys; 2011 Oct; 135(14):144114. PubMed ID: 22010705
    [TBL] [Abstract][Full Text] [Related]  

  • 13. [Protein conformational dynamics of crambin in crystal, solution and in the trajectories of molecular dynamics simulations].
    Abaturov LV; Nosova NG
    Biofizika; 2013; 58(4):599-617. PubMed ID: 24455881
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Collective Langevin dynamics of conformational motions in proteins.
    Lange OF; Grubmüller H
    J Chem Phys; 2006 Jun; 124(21):214903. PubMed ID: 16774438
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Long-timescale molecular dynamics simulations of protein structure and function.
    Klepeis JL; Lindorff-Larsen K; Dror RO; Shaw DE
    Curr Opin Struct Biol; 2009 Apr; 19(2):120-7. PubMed ID: 19361980
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Anisotropy and anharmonicity of atomic fluctuations in proteins: analysis of a molecular dynamics simulation.
    Ichiye T; Karplus M
    Proteins; 1987; 2(3):236-59. PubMed ID: 3447180
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comparison of DNA hydration patterns obtained using two distinct computational methods, molecular dynamics simulation and three-dimensional reference interaction site model theory.
    Yonetani Y; Maruyama Y; Hirata F; Kono H
    J Chem Phys; 2008 May; 128(18):185102. PubMed ID: 18532849
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Can principal components yield a dimension reduced description of protein dynamics on long time scales?
    Lange OF; Grubmüller H
    J Phys Chem B; 2006 Nov; 110(45):22842-52. PubMed ID: 17092036
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Crystal water dynamics of guanosine dihydrate: analysis of atomic displacement parameters, time profile of hydrogen-bonding probability, and translocation of water by MD simulation.
    Yoneda S; Sugawara Y; Urabe H
    J Phys Chem B; 2005 Jan; 109(3):1304-12. PubMed ID: 16851095
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Computer simulations of the refolding of sperm whale apomyoglobin from high-temperature denaturated state.
    Dametto M; Cárdenas AE
    J Phys Chem B; 2008 Aug; 112(31):9501-6. PubMed ID: 18616314
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.