BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

527 related articles for article (PubMed ID: 17671977)

  • 21. Development and testing of an automated approach to protein docking.
    Tovchigrechko A; Vakser IA
    Proteins; 2005 Aug; 60(2):296-301. PubMed ID: 15981259
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Modeling side-chains using molecular dynamics improve recognition of binding region in CAPRI targets.
    Camacho CJ
    Proteins; 2005 Aug; 60(2):245-51. PubMed ID: 15981253
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.
    Méndez R; Leplae R; Lensink MF; Wodak SJ
    Proteins; 2005 Aug; 60(2):150-69. PubMed ID: 15981261
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Protein-protein docking using 3D-Dock in rounds 3, 4, and 5 of CAPRI.
    Carter P; Lesk VI; Islam SA; Sternberg MJ
    Proteins; 2005 Aug; 60(2):281-8. PubMed ID: 15981271
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Biologically enhanced sampling geometric docking and backbone flexibility treatment with multiconformational superposition.
    Ma XH; Li CH; Shen LZ; Gong XQ; Chen WZ; Wang CX
    Proteins; 2005 Aug; 60(2):319-23. PubMed ID: 15981260
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Docking without docking: ISEARCH--prediction of interactions using known interfaces.
    Günther S; May P; Hoppe A; Frömmel C; Preissner R
    Proteins; 2007 Dec; 69(4):839-44. PubMed ID: 17803236
    [TBL] [Abstract][Full Text] [Related]  

  • 27. ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5.
    Wiehe K; Pierce B; Mintseris J; Tong WW; Anderson R; Chen R; Weng Z
    Proteins; 2005 Aug; 60(2):207-13. PubMed ID: 15981263
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Docking to single-domain and multiple-domain proteins: old and new challenges.
    Ben-Zeev E; Kowalsman N; Ben-Shimon A; Segal D; Atarot T; Noivirt O; Shay T; Eisenstein M
    Proteins; 2005 Aug; 60(2):195-201. PubMed ID: 15981268
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Docking of protein molecular surfaces with evolutionary trace analysis.
    Kanamori E; Murakami Y; Tsuchiya Y; Standley DM; Nakamura H; Kinoshita K
    Proteins; 2007 Dec; 69(4):832-8. PubMed ID: 17803239
    [TBL] [Abstract][Full Text] [Related]  

  • 30. The SKE-DOCK server and human teams based on a combined method of shape complementarity and free energy estimation.
    Terashi G; Takeda-Shitaka M; Kanou K; Iwadate M; Takaya D; Umeyama H
    Proteins; 2007 Dec; 69(4):866-72. PubMed ID: 17853449
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Searching for protein-protein interaction sites and docking by the methods of molecular dynamics, grid scoring, and the pairwise interaction potential of amino acid residues.
    Terashi G; Takeda-Shitaka M; Takaya D; Komatsu K; Umeyama H
    Proteins; 2005 Aug; 60(2):289-95. PubMed ID: 15981245
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function.
    Zhang C; Liu S; Zhou Y
    Proteins; 2005 Aug; 60(2):314-8. PubMed ID: 15981255
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Performance of the first protein docking server ClusPro in CAPRI rounds 3-5.
    Comeau SR; Vajda S; Camacho CJ
    Proteins; 2005 Aug; 60(2):239-44. PubMed ID: 15981265
    [TBL] [Abstract][Full Text] [Related]  

  • 34. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
    Gao Y; Douguet D; Tovchigrechko A; Vakser IA
    Proteins; 2007 Dec; 69(4):845-51. PubMed ID: 17803215
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Scoring docking models with evolutionary information.
    Tress M; de Juan D; Graña O; Gómez MJ; Gómez-Puertas P; González JM; López G; Valencia A
    Proteins; 2005 Aug; 60(2):275-80. PubMed ID: 15981273
    [TBL] [Abstract][Full Text] [Related]  

  • 36. A general approach for developing system-specific functions to score protein-ligand docked complexes using support vector inductive logic programming.
    Amini A; Shrimpton PJ; Muggleton SH; Sternberg MJ
    Proteins; 2007 Dec; 69(4):823-31. PubMed ID: 17910057
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Data-driven docking: HADDOCK's adventures in CAPRI.
    van Dijk AD; de Vries SJ; Dominguez C; Chen H; Zhou HX; Bonvin AM
    Proteins; 2005 Aug; 60(2):232-8. PubMed ID: 15981252
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Flexible relaxation of rigid-body docking solutions.
    Król M; Tournier AL; Bates PA
    Proteins; 2007 Jul; 68(1):159-69. PubMed ID: 17397060
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Modeling oligomers with Cn or Dn symmetry: application to CAPRI target 10.
    Berchanski A; Segal D; Eisenstein M
    Proteins; 2005 Aug; 60(2):202-6. PubMed ID: 15981250
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Geometry-based flexible and symmetric protein docking.
    Schneidman-Duhovny D; Inbar Y; Nussinov R; Wolfson HJ
    Proteins; 2005 Aug; 60(2):224-31. PubMed ID: 15981269
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 27.