451 related articles for article (PubMed ID: 17688429)
1. Evolved cellular automata for protein secondary structure prediction imitate the determinants for folding observed in nature.
Chopra P; Bender A
In Silico Biol; 2007; 7(1):87-93. PubMed ID: 17688429
[TBL] [Abstract][Full Text] [Related]
2. YASSPP: better kernels and coding schemes lead to improvements in protein secondary structure prediction.
Karypis G
Proteins; 2006 Aug; 64(3):575-86. PubMed ID: 16763996
[TBL] [Abstract][Full Text] [Related]
3. Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies.
Inbar Y; Benyamini H; Nussinov R; Wolfson HJ
Phys Biol; 2005 Nov; 2(4):S156-65. PubMed ID: 16280621
[TBL] [Abstract][Full Text] [Related]
4. Prediction of distant residue contacts with the use of evolutionary information.
Vicatos S; Reddy BV; Kaznessis Y
Proteins; 2005 Mar; 58(4):935-49. PubMed ID: 15645442
[TBL] [Abstract][Full Text] [Related]
5. An introduction to protein contact prediction.
Hamilton N; Huber T
Methods Mol Biol; 2008; 453():87-104. PubMed ID: 18712298
[TBL] [Abstract][Full Text] [Related]
6. Search for folding nuclei in native protein structures.
Shmygelska A
Bioinformatics; 2005 Jun; 21 Suppl 1():i394-402. PubMed ID: 15961484
[TBL] [Abstract][Full Text] [Related]
7. New method for protein secondary structure assignment based on a simple topological descriptor.
Taylor T; Rivera M; Wilson G; Vaisman II
Proteins; 2005 Aug; 60(3):513-24. PubMed ID: 15887224
[TBL] [Abstract][Full Text] [Related]
8. [Computational method for prediction of protein functional sites using specificity determinants].
Kalinina OV; Rassel RB; Rakhmaninova AB; Gel'fand MS
Mol Biol (Mosk); 2007; 41(1):151-62. PubMed ID: 17380902
[TBL] [Abstract][Full Text] [Related]
9. Sequence-based protein structure prediction using a reduced state-space hidden Markov model.
Lampros C; Costas Papaloukas ; Exarchos TP; Yorgos Goletsis ; Fotiadis DI
Comput Biol Med; 2007 Sep; 37(9):1211-24. PubMed ID: 17161834
[TBL] [Abstract][Full Text] [Related]
10. Prediction of buried helices in multispan alpha helical membrane proteins.
Adamian L; Liang J
Proteins; 2006 Apr; 63(1):1-5. PubMed ID: 16419070
[TBL] [Abstract][Full Text] [Related]
11. Computational modeling of protein mutant stability: analysis and optimization of statistical potentials and structural features reveal insights into prediction model development.
Parthiban V; Gromiha MM; Abhinandan M; Schomburg D
BMC Struct Biol; 2007 Aug; 7():54. PubMed ID: 17705837
[TBL] [Abstract][Full Text] [Related]
12. Scoring docking models with evolutionary information.
Tress M; de Juan D; Graña O; Gómez MJ; Gómez-Puertas P; González JM; López G; Valencia A
Proteins; 2005 Aug; 60(2):275-80. PubMed ID: 15981273
[TBL] [Abstract][Full Text] [Related]
13. Folded-unfolded cross-predictions and protein evolution: the case study of coiled-coils.
Szappanos B; Süveges D; Nyitray L; Perczel A; Gáspári Z
FEBS Lett; 2010 Apr; 584(8):1623-7. PubMed ID: 20303956
[TBL] [Abstract][Full Text] [Related]
14. The elastic net algorithm and protein structure prediction.
Ball KD; Erman B; Dill KA
J Comput Chem; 2002 Jan; 23(1):77-83. PubMed ID: 11913391
[TBL] [Abstract][Full Text] [Related]
15. Analysis of chameleon sequences and their implications in biological processes.
Guo JT; Jaromczyk JW; Xu Y
Proteins; 2007 May; 67(3):548-58. PubMed ID: 17299764
[TBL] [Abstract][Full Text] [Related]
16. Optimum folding pathways for growing protein chains.
Senturk S; Baday S; Arkun Y; Erman B
Phys Biol; 2007 Nov; 4(4):305-16. PubMed ID: 18185008
[TBL] [Abstract][Full Text] [Related]
17. Uncover the conserved property underlying sequence-distant and structure-similar proteins.
Gao J; Li Z
Biopolymers; 2010 Apr; 93(4):340-7. PubMed ID: 19890963
[TBL] [Abstract][Full Text] [Related]
18. How strongly do sequence conservation patterns and empirical scales correlate with exposure patterns of transmembrane helices of membrane proteins?
Park Y; Helms V
Biopolymers; 2006 Nov; 83(4):389-99. PubMed ID: 16838301
[TBL] [Abstract][Full Text] [Related]
19. The simulation of the three-dimensional lattice hydrophobic-polar protein folding.
Guo YZ; Feng EM
J Chem Phys; 2006 Dec; 125(23):234703. PubMed ID: 17190566
[TBL] [Abstract][Full Text] [Related]
20. Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home.
Das R; Qian B; Raman S; Vernon R; Thompson J; Bradley P; Khare S; Tyka MD; Bhat D; Chivian D; Kim DE; Sheffler WH; Malmström L; Wollacott AM; Wang C; Andre I; Baker D
Proteins; 2007; 69 Suppl 8():118-28. PubMed ID: 17894356
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]