173 related articles for article (PubMed ID: 17688442)
1. Efficient shape descriptors for feature extraction in 3D protein structures.
Ranganath A; Shet KC; Vidyavathi N
In Silico Biol; 2007; 7(2):169-74. PubMed ID: 17688442
[TBL] [Abstract][Full Text] [Related]
2. Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.
Morris RJ; Najmanovich RJ; Kahraman A; Thornton JM
Bioinformatics; 2005 May; 21(10):2347-55. PubMed ID: 15728116
[TBL] [Abstract][Full Text] [Related]
3. Form follows function: shape analysis of protein cavities for receptor-based drug design.
Weisel M; Proschak E; Kriegl JM; Schneider G
Proteomics; 2009 Jan; 9(2):451-9. PubMed ID: 19142949
[TBL] [Abstract][Full Text] [Related]
4. BSAlign: a rapid graph-based algorithm for detecting ligand-binding sites in protein structures.
Aung Z; Tong JC
Genome Inform; 2008; 21():65-76. PubMed ID: 19425148
[TBL] [Abstract][Full Text] [Related]
5. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
Najmanovich R; Kurbatova N; Thornton J
Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
[TBL] [Abstract][Full Text] [Related]
6. Computer-based design of novel protein structures.
Butterfoss GL; Kuhlman B
Annu Rev Biophys Biomol Struct; 2006; 35():49-65. PubMed ID: 16689627
[TBL] [Abstract][Full Text] [Related]
7. Protein function prediction using local 3D templates.
Laskowski RA; Watson JD; Thornton JM
J Mol Biol; 2005 Aug; 351(3):614-26. PubMed ID: 16019027
[TBL] [Abstract][Full Text] [Related]
8. Searching for patterns of amino acids in 3D protein structures.
Spriggs RV; Artymiuk PJ; Willett P
J Chem Inf Comput Sci; 2003; 43(2):412-21. PubMed ID: 12653503
[TBL] [Abstract][Full Text] [Related]
9. Library of local descriptors models the core of proteins accurately.
Drabikowski M; Nowakowski S; Tiuryn J
Proteins; 2007 Nov; 69(3):499-510. PubMed ID: 17623841
[TBL] [Abstract][Full Text] [Related]
10. Predicting enzyme functional surfaces and locating key residues automatically from structures.
Tseng YY; Liang J
Ann Biomed Eng; 2007 Jun; 35(6):1037-42. PubMed ID: 17294116
[TBL] [Abstract][Full Text] [Related]
11. Prediction of functional sites in proteins using conserved functional group analysis.
Innis CA; Anand AP; Sowdhamini R
J Mol Biol; 2004 Apr; 337(4):1053-68. PubMed ID: 15033369
[TBL] [Abstract][Full Text] [Related]
12. Potential for protein surface shape analysis using spherical harmonics and 3D Zernike descriptors.
Venkatraman V; Sael L; Kihara D
Cell Biochem Biophys; 2009; 54(1-3):23-32. PubMed ID: 19521674
[TBL] [Abstract][Full Text] [Related]
13. Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs.
Shamim MT; Anwaruddin M; Nagarajaram HA
Bioinformatics; 2007 Dec; 23(24):3320-7. PubMed ID: 17989092
[TBL] [Abstract][Full Text] [Related]
14. Importance of molecular computer modeling in anticancer drug development.
Geromichalos GD
J BUON; 2007 Sep; 12 Suppl 1():S101-18. PubMed ID: 17935268
[TBL] [Abstract][Full Text] [Related]
15. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
Fromer M; Yanover C
Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
[TBL] [Abstract][Full Text] [Related]
16. Prediction of protein structural classes by Chou's pseudo amino acid composition: approached using continuous wavelet transform and principal component analysis.
Li ZC; Zhou XB; Dai Z; Zou XY
Amino Acids; 2009 Jul; 37(2):415-25. PubMed ID: 18726140
[TBL] [Abstract][Full Text] [Related]
17. Molecular docking for substrate identification: the short-chain dehydrogenases/reductases.
Favia AD; Nobeli I; Glaser F; Thornton JM
J Mol Biol; 2008 Jan; 375(3):855-74. PubMed ID: 18036612
[TBL] [Abstract][Full Text] [Related]
18. A method for localizing ligand binding pockets in protein structures.
Glaser F; Morris RJ; Najmanovich RJ; Laskowski RA; Thornton JM
Proteins; 2006 Feb; 62(2):479-88. PubMed ID: 16304646
[TBL] [Abstract][Full Text] [Related]
19. Detection of multiscale pockets on protein surfaces using mathematical morphology.
Kawabata T
Proteins; 2010 Apr; 78(5):1195-211. PubMed ID: 19938154
[TBL] [Abstract][Full Text] [Related]
20. Characterization of local geometry of protein surfaces with the visibility criterion.
Li B; Turuvekere S; Agrawal M; La D; Ramani K; Kihara D
Proteins; 2008 May; 71(2):670-83. PubMed ID: 17975834
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
