100 related articles for article (PubMed ID: 17691832)
1. Statistically inferring protein-protein associations with affinity isolation LC-MS/MS assays.
Sharp JL; Anderson KK; Hurst GB; Daly DS; Pelletier DA; Cannon WR; Auberry DL; Schmoyer DD; McDonald WH; White AM; Hooker BS; Victry KD; Buchanan MV; Kery V; Wiley HS
J Proteome Res; 2007 Sep; 6(9):3788-95. PubMed ID: 17691832
[TBL] [Abstract][Full Text] [Related]
2. Detecting differential and correlated protein expression in label-free shotgun proteomics.
Zhang B; VerBerkmoes NC; Langston MA; Uberbacher E; Hettich RL; Samatova NF
J Proteome Res; 2006 Nov; 5(11):2909-18. PubMed ID: 17081042
[TBL] [Abstract][Full Text] [Related]
3. Evaluation of affinity-tagged protein expression strategies using local and global isotope ratio measurements.
Hervey WJ; Khalsa-Moyers G; Lankford PK; Owens ET; McKeown CK; Lu TY; Foote LJ; Asano KG; Morrell-Falvey JL; McDonald WH; Pelletier DA; Hurst GB
J Proteome Res; 2009 Jul; 8(7):3675-88. PubMed ID: 19459691
[TBL] [Abstract][Full Text] [Related]
4. Mixed-effects statistical model for comparative LC-MS proteomics studies.
Daly DS; Anderson KK; Panisko EA; Purvine SO; Fang R; Monroe ME; Baker SE
J Proteome Res; 2008 Mar; 7(3):1209-17. PubMed ID: 18251496
[TBL] [Abstract][Full Text] [Related]
5. An iterative strategy for precursor ion selection for LC-MS/MS based shotgun proteomics.
Zerck A; Nordhoff E; Resemann A; Mirgorodskaya E; Suckau D; Reinert K; Lehrach H; Gobom J
J Proteome Res; 2009 Jul; 8(7):3239-51. PubMed ID: 19402737
[TBL] [Abstract][Full Text] [Related]
6. Global quantitative proteomic profiling through 18O-labeling in combination with MS/MS spectra analysis.
White CA; Oey N; Emili A
J Proteome Res; 2009 Jul; 8(7):3653-65. PubMed ID: 19400582
[TBL] [Abstract][Full Text] [Related]
7. Retention time alignment algorithms for LC/MS data must consider non-linear shifts.
Podwojski K; Fritsch A; Chamrad DC; Paul W; Sitek B; Stühler K; Mutzel P; Stephan C; Meyer HE; Urfer W; Ickstadt K; Rahnenführer J
Bioinformatics; 2009 Mar; 25(6):758-64. PubMed ID: 19176558
[TBL] [Abstract][Full Text] [Related]
8. Shotgun cross-linking analysis for studying quaternary and tertiary protein structures.
Lee YJ; Lackner LL; Nunnari JM; Phinney BS
J Proteome Res; 2007 Oct; 6(10):3908-17. PubMed ID: 17854217
[TBL] [Abstract][Full Text] [Related]
9. Two-dimensional turbulent flow chromatography coupled on-line to liquid chromatography-mass spectrometry for solution-based ligand screening against multiple proteins.
Zhou JL; An JJ; Li P; Li HJ; Jiang Y; Cheng JF
J Chromatogr A; 2009 Mar; 1216(12):2394-403. PubMed ID: 19203758
[TBL] [Abstract][Full Text] [Related]
10. ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.
Pan C; Kora G; McDonald WH; Tabb DL; VerBerkmoes NC; Hurst GB; Pelletier DA; Samatova NF; Hettich RL
Anal Chem; 2006 Oct; 78(20):7121-31. PubMed ID: 17037911
[TBL] [Abstract][Full Text] [Related]
11. A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality.
Hart GT; Lee I; Marcotte ER
BMC Bioinformatics; 2007 Jul; 8():236. PubMed ID: 17605818
[TBL] [Abstract][Full Text] [Related]
12. Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution muLC-MS data.
Finney GL; Blackler AR; Hoopmann MR; Canterbury JD; Wu CC; MacCoss MJ
Anal Chem; 2008 Feb; 80(4):961-71. PubMed ID: 18189369
[TBL] [Abstract][Full Text] [Related]
13. A Bayesian estimator of protein-protein association probabilities.
Gilmore JM; Auberry DL; Sharp JL; White AM; Anderson KK; Daly DS
Bioinformatics; 2008 Jul; 24(13):1554-5. PubMed ID: 18499697
[TBL] [Abstract][Full Text] [Related]
14. MultiProtIdent: identifying proteins using database search and protein-protein interactions.
Huang HD; Lee TY; Wu LC; Lin FM; Juan HF; Horng JT; Tsou AP
J Proteome Res; 2005; 4(3):690-7. PubMed ID: 15952715
[TBL] [Abstract][Full Text] [Related]
15. PPI spider: a tool for the interpretation of proteomics data in the context of protein-protein interaction networks.
Antonov AV; Dietmann S; Rodchenkov I; Mewes HW
Proteomics; 2009 May; 9(10):2740-9. PubMed ID: 19405022
[TBL] [Abstract][Full Text] [Related]
16. A statistical framework to discover true associations from multiprotein complex pull-down proteomics data sets.
Shen C; Li L; Chen JY
Proteins; 2006 Aug; 64(2):436-43. PubMed ID: 16705649
[TBL] [Abstract][Full Text] [Related]
17. Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments.
Wong JW; Sullivan MJ; Cagney G
Brief Bioinform; 2008 Mar; 9(2):156-65. PubMed ID: 17905794
[TBL] [Abstract][Full Text] [Related]
18. Sequential peptide affinity purification system for the systematic isolation and identification of protein complexes from Escherichia coli.
Babu M; Butland G; Pogoutse O; Li J; Greenblatt JF; Emili A
Methods Mol Biol; 2009; 564():373-400. PubMed ID: 19544035
[TBL] [Abstract][Full Text] [Related]
19. Bayesian methods for predicting interacting protein pairs using domain information.
Kim I; Liu Y; Zhao H
Biometrics; 2007 Sep; 63(3):824-33. PubMed ID: 17825014
[TBL] [Abstract][Full Text] [Related]
20. Detection and identification of plasma proteins that bind GlialCAM using ProteinChip arrays, SELDI-TOF MS, and nano-LC MS/MS.
Favre-Kontula L; Sattonnet-Roche P; Magnenat E; Proudfoot AE; Boschert U; Xenarios I; Vilbois F; Antonsson B
Proteomics; 2008 Jan; 8(2):378-88. PubMed ID: 18203261
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
