136 related articles for article (PubMed ID: 17698494)
1. PhylArray: phylogenetic probe design algorithm for microarray.
Militon C; Rimour S; Missaoui M; Biderre C; Barra V; Hill D; Moné A; Gagne G; Meier H; Peyretaillade E; Peyret P
Bioinformatics; 2007 Oct; 23(19):2550-7. PubMed ID: 17698494
[TBL] [Abstract][Full Text] [Related]
2. Short oligonucleotide probes containing G-stacks display abnormal binding affinity on Affymetrix microarrays.
Wu C; Zhao H; Baggerly K; Carta R; Zhang L
Bioinformatics; 2007 Oct; 23(19):2566-72. PubMed ID: 17537749
[TBL] [Abstract][Full Text] [Related]
3. Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree.
Schliep A; Rahmann S
Bioinformatics; 2006 Jul; 22(14):e424-30. PubMed ID: 16873503
[TBL] [Abstract][Full Text] [Related]
4. Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy.
Hu G; Llinás M; Li J; Preiser PR; Bozdech Z
BMC Bioinformatics; 2007 Sep; 8():350. PubMed ID: 17880708
[TBL] [Abstract][Full Text] [Related]
5. Optimal robust non-unique probe selection using Integer Linear Programming.
Klau GW; Rahmann S; Schliep A; Vingron M; Reinert K
Bioinformatics; 2004 Aug; 20 Suppl 1():i186-93. PubMed ID: 15262798
[TBL] [Abstract][Full Text] [Related]
6. Optimization of probe coverage for high-resolution oligonucleotide aCGH.
Lipson D; Yakhini Z; Aumann Y
Bioinformatics; 2007 Jan; 23(2):e77-83. PubMed ID: 17237109
[TBL] [Abstract][Full Text] [Related]
7. Group testing with DNA chips: generating designs and decoding experiments.
Schliep A; Torney DC; Rahmann S
Proc IEEE Comput Soc Bioinform Conf; 2003; 2():84-91. PubMed ID: 16452782
[TBL] [Abstract][Full Text] [Related]
8. PROBER: oligonucleotide FISH probe design software.
Navin N; Grubor V; Hicks J; Leibu E; Thomas E; Troge J; Riggs M; Lundin P; Månér S; Sebat J; Zetterberg A; Wigler M
Bioinformatics; 2006 Oct; 22(19):2437-8. PubMed ID: 16740623
[TBL] [Abstract][Full Text] [Related]
9. Randomized probe selection algorithm for microarray design.
Gasieniec L; Li CY; Sant P; Wong PW
J Theor Biol; 2007 Oct; 248(3):512-21. PubMed ID: 17628606
[TBL] [Abstract][Full Text] [Related]
10. An application for assessing quality of RNA hybridized to Affymetrix GeneChips.
Archer KJ; Guennel T
Bioinformatics; 2006 Nov; 22(21):2699-701. PubMed ID: 16935927
[TBL] [Abstract][Full Text] [Related]
11. Model-P: a basecalling method for resequencing microarrays of diploid samples.
Zhan Y; Kulp D
Bioinformatics; 2005 Sep; 21 Suppl 2():ii182-9. PubMed ID: 16204100
[TBL] [Abstract][Full Text] [Related]
12. Identification of high-stringency DNA hairpin probes by partial gene folding.
Strohsahl CM; Krauss TD; Miller BL
Biosens Bioelectron; 2007 Sep; 23(2):233-40. PubMed ID: 17512187
[TBL] [Abstract][Full Text] [Related]
13. Assessing the need for sequence-based normalization in tiling microarray experiments.
Royce TE; Rozowsky JS; Gerstein MB
Bioinformatics; 2007 Apr; 23(8):988-97. PubMed ID: 17387113
[TBL] [Abstract][Full Text] [Related]
14. Design and testing of 'genome-proxy' microarrays to profile marine microbial communities.
Rich VI; Konstantinidis K; DeLong EF
Environ Microbiol; 2008 Feb; 10(2):506-21. PubMed ID: 18028413
[TBL] [Abstract][Full Text] [Related]
15. Fast and accurate probe selection algorithm for large genomes.
Sung WK; Lee WH
Proc IEEE Comput Soc Bioinform Conf; 2003; 2():65-74. PubMed ID: 16452780
[TBL] [Abstract][Full Text] [Related]
16. An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays.
Ono N; Suzuki S; Furusawa C; Agata T; Kashiwagi A; Shimizu H; Yomo T
Bioinformatics; 2008 May; 24(10):1278-85. PubMed ID: 18378525
[TBL] [Abstract][Full Text] [Related]
17. HiSpOD: probe design for functional DNA microarrays.
Dugat-Bony E; Missaoui M; Peyretaillade E; Biderre-Petit C; Bouzid O; Gouinaud C; Hill D; Peyret P
Bioinformatics; 2011 Mar; 27(5):641-8. PubMed ID: 21216777
[TBL] [Abstract][Full Text] [Related]
18. Quantitative oligonucleotide microarray data analysis with an artificial standard probe strategy.
Hwang BH; Cha HJ
Biosens Bioelectron; 2008 Jun; 23(11):1738-44. PubMed ID: 18337080
[TBL] [Abstract][Full Text] [Related]
19. The unique probe selector: a comprehensive web service for probe design and oligonucleotide arrays.
Chen SH; Lo CZ; Tsai MC; Hsiung CA; Lin CY
BMC Bioinformatics; 2008; 9 Suppl 1(Suppl 1):S8. PubMed ID: 18315861
[TBL] [Abstract][Full Text] [Related]
20. A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.
Alberts R; Terpstra P; Hardonk M; Bystrykh LV; de Haan G; Breitling R; Nap JP; Jansen RC
BMC Bioinformatics; 2007 Apr; 8():132. PubMed ID: 17448222
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
