291 related articles for article (PubMed ID: 17709332)
1. Mind the gaps: evidence of bias in estimates of multiple sequence alignments.
Golubchik T; Wise MJ; Easteal S; Jermiin LS
Mol Biol Evol; 2007 Nov; 24(11):2433-42. PubMed ID: 17709332
[TBL] [Abstract][Full Text] [Related]
2. Assessing the efficiency of multiple sequence alignment programs.
Pais FS; Ruy PC; Oliveira G; Coimbra RS
Algorithms Mol Biol; 2014 Mar; 9(1):4. PubMed ID: 24602402
[TBL] [Abstract][Full Text] [Related]
3. Improvement in the accuracy of multiple sequence alignment program MAFFT.
Katoh K; Kuma K; Miyata T; Toh H
Genome Inform; 2005; 16(1):22-33. PubMed ID: 16362903
[TBL] [Abstract][Full Text] [Related]
4. The accuracy of several multiple sequence alignment programs for proteins.
Nuin PA; Wang Z; Tillier ER
BMC Bioinformatics; 2006 Oct; 7():471. PubMed ID: 17062146
[TBL] [Abstract][Full Text] [Related]
5. Evaluating the accuracy and efficiency of multiple sequence alignment methods.
Pervez MT; Babar ME; Nadeem A; Aslam M; Awan AR; Aslam N; Hussain T; Naveed N; Qadri S; Waheed U; Shoaib M
Evol Bioinform Online; 2014; 10():205-17. PubMed ID: 25574120
[TBL] [Abstract][Full Text] [Related]
6. MUSCLE: multiple sequence alignment with high accuracy and high throughput.
Edgar RC
Nucleic Acids Res; 2004; 32(5):1792-7. PubMed ID: 15034147
[TBL] [Abstract][Full Text] [Related]
7. Phylogeny-aware alignment with PRANK.
Löytynoja A
Methods Mol Biol; 2014; 1079():155-70. PubMed ID: 24170401
[TBL] [Abstract][Full Text] [Related]
8. DIALIGN: finding local similarities by multiple sequence alignment.
Morgenstern B; Frech K; Dress A; Werner T
Bioinformatics; 1998; 14(3):290-4. PubMed ID: 9614273
[TBL] [Abstract][Full Text] [Related]
9. A knowledge-based multiple-sequence alignment algorithm.
Nguyen KD; Pan Y
IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(4):884-96. PubMed ID: 24334383
[TBL] [Abstract][Full Text] [Related]
10. Protein multiple sequence alignment benchmarking through secondary structure prediction.
Le Q; Sievers F; Higgins DG
Bioinformatics; 2017 May; 33(9):1331-1337. PubMed ID: 28093407
[TBL] [Abstract][Full Text] [Related]
11. A Novel Approach to Multiple Sequence Alignment Using Multiobjective Evolutionary Algorithm Based on Decomposition.
Zhu H; He Z; Jia Y
IEEE J Biomed Health Inform; 2016 Mar; 20(2):717-27. PubMed ID: 25700475
[TBL] [Abstract][Full Text] [Related]
12. MAFFT-DASH: integrated protein sequence and structural alignment.
Rozewicki J; Li S; Amada KM; Standley DM; Katoh K
Nucleic Acids Res; 2019 Jul; 47(W1):W5-W10. PubMed ID: 31062021
[TBL] [Abstract][Full Text] [Related]
13. Biclustering as a method for RNA local multiple sequence alignment.
Wang S; Gutell RR; Miranker DP
Bioinformatics; 2007 Dec; 23(24):3289-96. PubMed ID: 17921494
[TBL] [Abstract][Full Text] [Related]
14. Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost.
Yamada S; Gotoh O; Yamana H
BMC Bioinformatics; 2006 Dec; 7():524. PubMed ID: 17137519
[TBL] [Abstract][Full Text] [Related]
15. Characterization of multiple sequence alignment errors using complete-likelihood score and position-shift map.
Ezawa K
BMC Bioinformatics; 2016 Mar; 17():133. PubMed ID: 26992851
[TBL] [Abstract][Full Text] [Related]
16. Align-m--a new algorithm for multiple alignment of highly divergent sequences.
Van Walle I; Lasters I; Wyns L
Bioinformatics; 2004 Jun; 20(9):1428-35. PubMed ID: 14962914
[TBL] [Abstract][Full Text] [Related]
17. Parallelization of MAFFT for large-scale multiple sequence alignments.
Nakamura T; Yamada KD; Tomii K; Katoh K
Bioinformatics; 2018 Jul; 34(14):2490-2492. PubMed ID: 29506019
[TBL] [Abstract][Full Text] [Related]
18. Scalable Consistency in T-Coffee Through Apache Spark and Cassandra Database.
Lladós J; Cores F; Guirado F
J Comput Biol; 2018 Aug; 25(8):894-906. PubMed ID: 30004242
[TBL] [Abstract][Full Text] [Related]
19. Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties.
Neuwald AF; Altschul SF
PLoS Comput Biol; 2016 May; 12(5):e1004936. PubMed ID: 27192614
[TBL] [Abstract][Full Text] [Related]
20. A Parallel Multiobjective Metaheuristic for Multiple Sequence Alignment.
Rubio-Largo Á; Castelli M; Vanneschi L; Vega-Rodríguez MA
J Comput Biol; 2018 Sep; 25(9):1009-1022. PubMed ID: 29671616
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
