235 related articles for article (PubMed ID: 17709750)
1. How gene order is influenced by the biophysics of transcription regulation.
Kolesov G; Wunderlich Z; Laikova ON; Gelfand MS; Mirny LA
Proc Natl Acad Sci U S A; 2007 Aug; 104(35):13948-53. PubMed ID: 17709750
[TBL] [Abstract][Full Text] [Related]
2. The entire organization of transcription units on the Bacillus subtilis genome.
Kobayashi H; Akitomi J; Fujii N; Kobayashi K; Altaf-Ul-Amin M; Kurokawa K; Ogasawara N; Kanaya S
BMC Genomics; 2007 Jun; 8():197. PubMed ID: 17598888
[TBL] [Abstract][Full Text] [Related]
3. Unraveling transcription regulatory networks by protein-DNA and protein-protein interaction mapping.
Walhout AJ
Genome Res; 2006 Dec; 16(12):1445-54. PubMed ID: 17053092
[TBL] [Abstract][Full Text] [Related]
4. Genome-wide survey of transcription factors in prokaryotes reveals many bacteria-specific families not found in archaea.
Minezaki Y; Homma K; Nishikawa K
DNA Res; 2005; 12(5):269-80. PubMed ID: 16769689
[TBL] [Abstract][Full Text] [Related]
5. Persistence drives gene clustering in bacterial genomes.
Fang G; Rocha EP; Danchin A
BMC Genomics; 2008 Jan; 9():4. PubMed ID: 18179692
[TBL] [Abstract][Full Text] [Related]
6. Physical constraints and functional characteristics of transcription factor-DNA interaction.
Gerland U; Moroz JD; Hwa T
Proc Natl Acad Sci U S A; 2002 Sep; 99(19):12015-20. PubMed ID: 12218191
[TBL] [Abstract][Full Text] [Related]
7. Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes.
Couturier E; Rocha EP
Mol Microbiol; 2006 Mar; 59(5):1506-18. PubMed ID: 16468991
[TBL] [Abstract][Full Text] [Related]
8. Modeling transcription factor binding events to DNA using a random walker/jumper representation on a 1D/2D lattice with different affinity sites.
Rezania V; Tuszynski J; Hendzel M
Phys Biol; 2007 Nov; 4(4):256-67. PubMed ID: 18185004
[TBL] [Abstract][Full Text] [Related]
9. Assessing TF regulatory relationships of divergently transcribed genes.
Chen L; Cai L; Skogerbø G; Zhao Y; Chen R
Genomics; 2008 Nov; 92(5):316-21. PubMed ID: 18755263
[TBL] [Abstract][Full Text] [Related]
10. DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise.
Vilar JM; Saiz L
Curr Opin Genet Dev; 2005 Apr; 15(2):136-44. PubMed ID: 15797196
[TBL] [Abstract][Full Text] [Related]
11. Predicting transcription factor affinities to DNA from a biophysical model.
Roider HG; Kanhere A; Manke T; Vingron M
Bioinformatics; 2007 Jan; 23(2):134-41. PubMed ID: 17098775
[TBL] [Abstract][Full Text] [Related]
12. Are clustered genes in the genomes of Arabidopsis and Drosophila regulated differently?
Boutanaev AM; Nemchinov LG
Gene; 2012 Jan; 491(2):284-8. PubMed ID: 22008664
[TBL] [Abstract][Full Text] [Related]
13. A novel strategy to search conserved transcription factor binding sites among coexpressing genes in human.
Hatanaka Y; Nagasaki M; Yamaguchi R; Obayashi T; Numata K; Fujita A; Shimamura T; Tamada Y; Imoto S; Kinoshita K; Nakai K; Miyano S
Genome Inform; 2008; 20():212-21. PubMed ID: 19425135
[TBL] [Abstract][Full Text] [Related]
14. Optimal gene partition into operons correlates with gene functional order.
Zaslaver A; Mayo A; Ronen M; Alon U
Phys Biol; 2006 Sep; 3(3):183-9. PubMed ID: 17021382
[TBL] [Abstract][Full Text] [Related]
15. Detecting gene clusters under evolutionary constraint in a large number of genomes.
Ling X; He X; Xin D
Bioinformatics; 2009 Mar; 25(5):571-7. PubMed ID: 19158161
[TBL] [Abstract][Full Text] [Related]
16. Periodic transcriptional organization of the E.coli genome.
Képès F
J Mol Biol; 2004 Jul; 340(5):957-64. PubMed ID: 15236959
[TBL] [Abstract][Full Text] [Related]
17. Stochastic model of transcription factor-regulated gene expression.
Karmakar R; Bose I
Phys Biol; 2006 Sep; 3(3):200-8. PubMed ID: 17021384
[TBL] [Abstract][Full Text] [Related]
18. What are the molecular ties that maintain genomic loops?
Marenduzzo D; Faro-Trindade I; Cook PR
Trends Genet; 2007 Mar; 23(3):126-33. PubMed ID: 17280735
[TBL] [Abstract][Full Text] [Related]
19. DNA-binding activity of the vancomycin resistance associated regulator protein VraR and the role of phosphorylation in transcriptional regulation of the vraSR operon.
Belcheva A; Verma V; Golemi-Kotra D
Biochemistry; 2009 Jun; 48(24):5592-601. PubMed ID: 19419158
[TBL] [Abstract][Full Text] [Related]
20. Using transcription factor binding site co-occurrence to predict regulatory regions.
Klein H; Vingron M
Genome Inform; 2007; 18():109-18. PubMed ID: 18546479
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
