230 related articles for article (PubMed ID: 17710364)
21. Residue conservation information for generating near-native structures in protein-protein docking.
Duan Y; Reddy BV; Kaznessis YN
J Bioinform Comput Biol; 2006 Aug; 4(4):793-806. PubMed ID: 17007068
[TBL] [Abstract][Full Text] [Related]
22. Incorporating background frequency improves entropy-based residue conservation measures.
Wang K; Samudrala R
BMC Bioinformatics; 2006 Aug; 7():385. PubMed ID: 16916457
[TBL] [Abstract][Full Text] [Related]
23. Protein-protein interactions leave evolutionary footprints: High molecular coevolution at the core of interfaces.
Teppa E; Zea DJ; Marino-Buslje C
Protein Sci; 2017 Dec; 26(12):2438-2444. PubMed ID: 28980349
[TBL] [Abstract][Full Text] [Related]
24. Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix.
Ndhlovu A; Hazelhurst S; Durand PM
BMC Bioinformatics; 2015 Aug; 16():255. PubMed ID: 26269100
[TBL] [Abstract][Full Text] [Related]
25. Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins.
Landgraf R; Xenarios I; Eisenberg D
J Mol Biol; 2001 Apr; 307(5):1487-502. PubMed ID: 11292355
[TBL] [Abstract][Full Text] [Related]
26. A quantitative analysis of interfacial amino acid conservation in protein-protein hetero complexes.
Reddy BV; Kaznessis YN
J Bioinform Comput Biol; 2005 Oct; 3(5):1137-50. PubMed ID: 16278951
[TBL] [Abstract][Full Text] [Related]
27. Phylogenetic and Other Conservation-Based Approaches to Predict Protein Functional Sites.
Atas H; Tuncbag N; Doğan T
Methods Mol Biol; 2018; 1762():51-69. PubMed ID: 29594767
[TBL] [Abstract][Full Text] [Related]
28. Inferring property selection pressure from positional residue conservation.
Hoberman R; Klein-Seetharaman J; Rosenfeld R
Appl Bioinformatics; 2004; 3(2-3):167-79. PubMed ID: 15693742
[TBL] [Abstract][Full Text] [Related]
29. Entropy calculator: getting the best from your multiple protein alignments.
Ramazzotti M; Degl'Innocenti D; Manao G; Ramponi G
Ital J Biochem; 2004 Mar; 53(1):16-22. PubMed ID: 15356957
[TBL] [Abstract][Full Text] [Related]
30. The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction.
Manning JR; Jefferson ER; Barton GJ
BMC Bioinformatics; 2008 Jan; 9():51. PubMed ID: 18221517
[TBL] [Abstract][Full Text] [Related]
31. Reconstruction of ancestral protein sequences and its applications.
Cai W; Pei J; Grishin NV
BMC Evol Biol; 2004 Sep; 4():33. PubMed ID: 15377393
[TBL] [Abstract][Full Text] [Related]
32. Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
Pei J; Cai W; Kinch LN; Grishin NV
Bioinformatics; 2006 Jan; 22(2):164-71. PubMed ID: 16278237
[TBL] [Abstract][Full Text] [Related]
33. Evolutionary construction of multiple graph alignments for the structural analysis of biomolecules.
Fober T; Mernberger M; Klebe G; Hüllermeier E
Bioinformatics; 2009 Aug; 25(16):2110-7. PubMed ID: 19286830
[TBL] [Abstract][Full Text] [Related]
34. Predicting ligand binding residues and functional sites using multipositional correlations with graph theoretic clustering and kernel CCA.
González AJ; Liao L; Wu CH
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(4):992-1001. PubMed ID: 22025754
[TBL] [Abstract][Full Text] [Related]
35. Identification of functionally conserved residues with the use of entropy-variability plots.
Oliveira L; Paiva PB; Paiva AC; Vriend G
Proteins; 2003 Sep; 52(4):544-52. PubMed ID: 12910454
[TBL] [Abstract][Full Text] [Related]
36. Predicting protein interaction sites from residue spatial sequence profile and evolution rate.
Wang B; Chen P; Huang DS; Li JJ; Lok TM; Lyu MR
FEBS Lett; 2006 Jan; 580(2):380-4. PubMed ID: 16376878
[TBL] [Abstract][Full Text] [Related]
37. A Shannon entropy-based filter detects high- quality profile-profile alignments in searches for remote homologues.
Capriotti E; Fariselli P; Rossi I; Casadio R
Proteins; 2004 Feb; 54(2):351-60. PubMed ID: 14696197
[TBL] [Abstract][Full Text] [Related]
38. Disentangling evolutionary signals: conservation, specificity determining positions and coevolution. Implication for catalytic residue prediction.
Teppa E; Wilkins AD; Nielsen M; Buslje CM
BMC Bioinformatics; 2012 Sep; 13():235. PubMed ID: 22978315
[TBL] [Abstract][Full Text] [Related]
39. Sequence harmony: detecting functional specificity from alignments.
Feenstra KA; Pirovano W; Krab K; Heringa J
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W495-8. PubMed ID: 17584793
[TBL] [Abstract][Full Text] [Related]
40. Protein sectors: statistical coupling analysis versus conservation.
Teşileanu T; Colwell LJ; Leibler S
PLoS Comput Biol; 2015 Feb; 11(2):e1004091. PubMed ID: 25723535
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]