These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

218 related articles for article (PubMed ID: 17726097)

  • 1. Solvent coarse-graining and the string method applied to the hydrophobic collapse of a hydrated chain.
    Miller TF; Vanden-Eijnden E; Chandler D
    Proc Natl Acad Sci U S A; 2007 Sep; 104(37):14559-64. PubMed ID: 17726097
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An improved coarse-grained model of solvation and the hydrophobic effect.
    Varilly P; Patel AJ; Chandler D
    J Chem Phys; 2011 Feb; 134(7):074109. PubMed ID: 21341830
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Dynamics of water in the hydration shells of C60: molecular dynamics simulation using a coarse-grained model.
    Choudhury N
    J Phys Chem B; 2007 Sep; 111(35):10474-80. PubMed ID: 17696526
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Transition path from two apposed membranes to a stalk obtained by a combination of particle simulations and string method.
    Müller M; Smirnova YG; Marelli G; Fuhrmans M; Shi AC
    Phys Rev Lett; 2012 Jun; 108(22):228103. PubMed ID: 23003657
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A coarse-grained protein model in a water-like solvent.
    Sharma S; Kumar SK; Buldyrev SV; Debenedetti PG; Rossky PJ; Stanley HE
    Sci Rep; 2013; 3():1841. PubMed ID: 23674146
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Atomic-resolution dissection of the energetics and mechanism of isomerization of hydrated ATP-Mg(2+) through the SOMA string method.
    Branduardi D; Marinelli F; Faraldo-Gómez JD
    J Comput Chem; 2016 Mar; 37(6):575-86. PubMed ID: 26149527
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Self-assembling dipeptides: including solvent degrees of freedom in a coarse-grained model.
    Villa A; van der Vegt NF; Peter C
    Phys Chem Chem Phys; 2009 Mar; 11(12):2068-76. PubMed ID: 19280017
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Necessity of high-resolution for coarse-grained modeling of flexible proteins.
    Jia Z; Chen J
    J Comput Chem; 2016 Jul; 37(18):1725-33. PubMed ID: 27130454
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Glycosylation enhances peptide hydrophobic collapse by impairing solvation.
    Cheng S; Edwards SA; Jiang Y; Gräter F
    Chemphyschem; 2010 Aug; 11(11):2367-74. PubMed ID: 20583025
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Implicit solvent systematic coarse-graining of dioleoylphosphatidylethanolamine lipids: From the inverted hexagonal to the bilayer structure.
    Mortezazadeh S; Jamali Y; Naderi-Manesh H; Lyubartsev AP
    PLoS One; 2019; 14(4):e0214673. PubMed ID: 30951539
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Multiscale coarse graining of liquid-state systems.
    Izvekov S; Voth GA
    J Chem Phys; 2005 Oct; 123(13):134105. PubMed ID: 16223273
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Hydration Properties and Solvent Effects for All-Atom Solutes in Polarizable Coarse-Grained Water.
    Yan XC; Tirado-Rives J; Jorgensen WL
    J Phys Chem B; 2016 Aug; 120(33):8102-14. PubMed ID: 26901452
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Reintroducing explicit solvent to a solvent-free coarse-grained model.
    Kim SH; Lamm MH
    Phys Rev E Stat Nonlin Soft Matter Phys; 2011 Aug; 84(2 Pt 2):025701. PubMed ID: 21929055
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Collapse transition of a hydrophobic self-avoiding random walk in a coarse-grained model solvent.
    Gaudreault M; Viñals J
    Phys Rev E Stat Nonlin Soft Matter Phys; 2009 Aug; 80(2 Pt 1):021916. PubMed ID: 19792160
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Adaptive resolution simulation of polarizable supramolecular coarse-grained water models.
    Zavadlav J; Melo MN; Marrink SJ; Praprotnik M
    J Chem Phys; 2015 Jun; 142(24):244118. PubMed ID: 26133421
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Coarse graining of nonbonded degrees of freedom.
    Bock H; Gubbins KE; Klapp SH
    Phys Rev Lett; 2007 Jun; 98(26):267801. PubMed ID: 17678128
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Dehydration-driven solvent exposure of hydrophobic surfaces as a driving force in peptide folding.
    Daidone I; Ulmschneider MB; Di Nola A; Amadei A; Smith JC
    Proc Natl Acad Sci U S A; 2007 Sep; 104(39):15230-5. PubMed ID: 17881585
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The CUMULUS coarse graining method: transferable potentials for water and solutes.
    van Hoof B; Markvoort AJ; van Santen RA; Hilbers PA
    J Phys Chem B; 2011 Aug; 115(33):10001-12. PubMed ID: 21740053
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Adaptive resolution simulations of biomolecular systems.
    Zavadlav J; Bevc S; Praprotnik M
    Eur Biophys J; 2017 Dec; 46(8):821-835. PubMed ID: 28905203
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.