BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

615 related articles for article (PubMed ID: 17764165)

  • 1. A quantum mechanical investigation of possible mechanisms for the nucleotidyl transfer reaction catalyzed by DNA polymerase beta.
    Bojin MD; Schlick T
    J Phys Chem B; 2007 Sep; 111(38):11244-52. PubMed ID: 17764165
    [TBL] [Abstract][Full Text] [Related]  

  • 2. DNA polymerase beta catalysis: are different mechanisms possible?
    Alberts IL; Wang Y; Schlick T
    J Am Chem Soc; 2007 Sep; 129(36):11100-10. PubMed ID: 17696533
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Mechanism of nucleotide incorporation in DNA polymerase beta.
    Radhakrishnan R
    Biochem Biophys Res Commun; 2006 Sep; 347(3):626-33. PubMed ID: 16842743
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Critical role of magnesium ions in DNA polymerase beta's closing and active site assembly.
    Yang L; Arora K; Beard WA; Wilson SH; Schlick T
    J Am Chem Soc; 2004 Jul; 126(27):8441-53. PubMed ID: 15238001
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Characterization of the active site of DNA polymerase beta by molecular dynamics and quantum chemical calculation.
    Rittenhouse RC; Apostoluk WK; Miller JH; Straatsma TP
    Proteins; 2003 Nov; 53(3):667-82. PubMed ID: 14579358
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Computer simulation of the chemical catalysis of DNA polymerases: discriminating between alternative nucleotide insertion mechanisms for T7 DNA polymerase.
    Florián J; Goodman MF; Warshel A
    J Am Chem Soc; 2003 Jul; 125(27):8163-77. PubMed ID: 12837086
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Mismatch-induced conformational distortions in polymerase beta support an induced-fit mechanism for fidelity.
    Arora K; Beard WA; Wilson SH; Schlick T
    Biochemistry; 2005 Oct; 44(40):13328-41. PubMed ID: 16201758
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Mechanisms of antibiotic resistance: QM/MM modeling of the acylation reaction of a class A beta-lactamase with benzylpenicillin.
    Hermann JC; Hensen C; Ridder L; Mulholland AJ; Höltje HD
    J Am Chem Soc; 2005 Mar; 127(12):4454-65. PubMed ID: 15783228
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Active site dynamics and combined quantum mechanics/molecular mechanics (QM/MM) modelling of a HIV-1 reverse transcriptase/DNA/dTTP complex.
    Rungrotmongkol T; Mulholland AJ; Hannongbua S
    J Mol Graph Model; 2007 Jul; 26(1):1-13. PubMed ID: 17046299
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Quantum mechanics/molecular mechanics investigation of the chemical reaction in Dpo4 reveals water-dependent pathways and requirements for active site reorganization.
    Wang Y; Schlick T
    J Am Chem Soc; 2008 Oct; 130(40):13240-50. PubMed ID: 18785738
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Quantifying free energy profiles of proton transfer reactions in solution and proteins by using a diabatic FDFT mapping.
    Xiang Y; Warshel A
    J Phys Chem B; 2008 Jan; 112(3):1007-15. PubMed ID: 18166038
    [TBL] [Abstract][Full Text] [Related]  

  • 12. QM/MM study of the second proton transfer in the catalytic cycle of the D251N mutant of cytochrome P450cam.
    Altarsha M; Wang D; Benighaus T; Kumar D; Thiel W
    J Phys Chem B; 2009 Jul; 113(28):9577-88. PubMed ID: 19537775
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Kinetic isotope effects for concerted multiple proton transfer: a direct dynamics study of an active-site model of carbonic anhydrase II.
    Smedarchina Z; Siebrand W; Fernández-Ramos A; Cui Q
    J Am Chem Soc; 2003 Jan; 125(1):243-51. PubMed ID: 12515527
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Hybrid QM/MM and DFT investigations of the catalytic mechanism and inhibition of the dinuclear zinc metallo-beta-lactamase CcrA from Bacteroides fragilis.
    Park H; Brothers EN; Merz KM
    J Am Chem Soc; 2005 Mar; 127(12):4232-41. PubMed ID: 15783205
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A closed conformation for the Pol lambda catalytic cycle.
    Garcia-Diaz M; Bebenek K; Krahn JM; Kunkel TA; Pedersen LC
    Nat Struct Mol Biol; 2005 Jan; 12(1):97-8. PubMed ID: 15608652
    [TBL] [Abstract][Full Text] [Related]  

  • 16. QM/MM study on the reaction mechanism of O6-alkylguanine-DNA alkyltransferase.
    Hou Q; Du L; Gao J; Liu Y; Liu C
    J Phys Chem B; 2010 Nov; 114(46):15296-300. PubMed ID: 21038902
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Mechanistic aspects of propene epoxidation by hydrogen peroxide. Catalytic role of water molecules, external electric field, and zeolite framework of TS-1.
    Stare J; Henson NJ; Eckert J
    J Chem Inf Model; 2009 Apr; 49(4):833-46. PubMed ID: 19267473
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Transition state analogues for nucleotidyl transfer reactions: Structure and stability of pentavalent vanadate and phosphate ester dianions.
    Borden J; Crans DC; Florián J
    J Phys Chem B; 2006 Aug; 110(30):14988-99. PubMed ID: 16869614
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Correct and incorrect nucleotide incorporation pathways in DNA polymerase beta.
    Radhakrishnan R; Schlick T
    Biochem Biophys Res Commun; 2006 Nov; 350(3):521-9. PubMed ID: 17022941
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Energy analysis of chemistry for correct insertion by DNA polymerase beta.
    Lin P; Pedersen LC; Batra VK; Beard WA; Wilson SH; Pedersen LG
    Proc Natl Acad Sci U S A; 2006 Sep; 103(36):13294-9. PubMed ID: 16938895
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 31.