BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

383 related articles for article (PubMed ID: 17803214)

  • 1. Protein-protein docking: progress in CAPRI rounds 6-12 using a combination of methods: the introduction of steered solvated molecular dynamics.
    Heifetz A; Pal S; Smith GR
    Proteins; 2007 Dec; 69(4):816-22. PubMed ID: 17803214
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI.
    Wiehe K; Pierce B; Tong WW; Hwang H; Mintseris J; Weng Z
    Proteins; 2007 Dec; 69(4):719-25. PubMed ID: 17803212
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The targets of CAPRI rounds 6-12.
    Janin J
    Proteins; 2007 Dec; 69(4):699-703. PubMed ID: 17671980
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Prediction and scoring of docking poses with pyDock.
    Grosdidier S; Pons C; Solernou A; Fernández-Recio J
    Proteins; 2007 Dec; 69(4):852-8. PubMed ID: 17876821
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RosettaDock in CAPRI rounds 6-12.
    Wang C; Schueler-Furman O; Andre I; London N; Fleishman SJ; Bradley P; Qian B; Baker D
    Proteins; 2007 Dec; 69(4):758-63. PubMed ID: 17671979
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protein-protein docking in CAPRI using ATTRACT to account for global and local flexibility.
    May A; Zacharias M
    Proteins; 2007 Dec; 69(4):774-80. PubMed ID: 17803217
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Docking and scoring protein complexes: CAPRI 3rd Edition.
    Lensink MF; Méndez R; Wodak SJ
    Proteins; 2007 Dec; 69(4):704-18. PubMed ID: 17918726
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
    Fernández-Recio J; Abagyan R; Totrov M
    Proteins; 2005 Aug; 60(2):308-13. PubMed ID: 15981266
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Incorporation of flexibility into rigid-body docking: applications in rounds 3-5 of CAPRI.
    Smith GR; Fitzjohn PW; Page CS; Bates PA
    Proteins; 2005 Aug; 60(2):263-8. PubMed ID: 15981258
    [TBL] [Abstract][Full Text] [Related]  

  • 10. HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets.
    de Vries SJ; van Dijk AD; Krzeminski M; van Dijk M; Thureau A; Hsu V; Wassenaar T; Bonvin AM
    Proteins; 2007 Dec; 69(4):726-33. PubMed ID: 17803234
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Implicit flexibility in protein docking: cross-docking and local refinement.
    Król M; Chaleil RA; Tournier AL; Bates PA
    Proteins; 2007 Dec; 69(4):750-7. PubMed ID: 17671977
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Approaching the CAPRI challenge with an efficient geometry-based docking.
    Inbar Y; Schneidman-Duhovny D; Halperin I; Oron A; Nussinov R; Wolfson HJ
    Proteins; 2005 Aug; 60(2):217-23. PubMed ID: 15981251
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Assessing the energy landscape of CAPRI targets by FunHunt.
    London N; Schueler-Furman O
    Proteins; 2007 Dec; 69(4):809-15. PubMed ID: 17803233
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A holistic approach to protein docking.
    Qin S; Zhou HX
    Proteins; 2007 Dec; 69(4):743-9. PubMed ID: 17803232
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Docking essential dynamics eigenstructures.
    Mustard D; Ritchie DW
    Proteins; 2005 Aug; 60(2):269-74. PubMed ID: 15981272
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ClusPro: performance in CAPRI rounds 6-11 and the new server.
    Comeau SR; Kozakov D; Brenke R; Shen Y; Beglov D; Vajda S
    Proteins; 2007 Dec; 69(4):781-5. PubMed ID: 17876812
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Protein-protein docking using 3D-Dock in rounds 3, 4, and 5 of CAPRI.
    Carter P; Lesk VI; Islam SA; Sternberg MJ
    Proteins; 2005 Aug; 60(2):281-8. PubMed ID: 15981271
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.
    Méndez R; Leplae R; Lensink MF; Wodak SJ
    Proteins; 2005 Aug; 60(2):150-69. PubMed ID: 15981261
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The SKE-DOCK server and human teams based on a combined method of shape complementarity and free energy estimation.
    Terashi G; Takeda-Shitaka M; Kanou K; Iwadate M; Takaya D; Umeyama H
    Proteins; 2007 Dec; 69(4):866-72. PubMed ID: 17853449
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Docking of protein molecular surfaces with evolutionary trace analysis.
    Kanamori E; Murakami Y; Tsuchiya Y; Standley DM; Nakamura H; Kinoshita K
    Proteins; 2007 Dec; 69(4):832-8. PubMed ID: 17803239
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.