BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

221 related articles for article (PubMed ID: 17853451)

  • 1. Docking with PIPER and refinement with SDU in rounds 6-11 of CAPRI.
    Shen Y; Brenke R; Kozakov D; Comeau SR; Beglov D; Vajda S
    Proteins; 2007 Dec; 69(4):734-42. PubMed ID: 17853451
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Achieving reliability and high accuracy in automated protein docking: ClusPro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19.
    Kozakov D; Hall DR; Beglov D; Brenke R; Comeau SR; Shen Y; Li K; Zheng J; Vakili P; Paschalidis ICh; Vajda S
    Proteins; 2010 Nov; 78(15):3124-30. PubMed ID: 20818657
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ClusPro: performance in CAPRI rounds 6-11 and the new server.
    Comeau SR; Kozakov D; Brenke R; Shen Y; Beglov D; Vajda S
    Proteins; 2007 Dec; 69(4):781-5. PubMed ID: 17876812
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O; Wang C; Baker D
    Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RosettaDock in CAPRI rounds 6-12.
    Wang C; Schueler-Furman O; Andre I; London N; Fleishman SJ; Bradley P; Qian B; Baker D
    Proteins; 2007 Dec; 69(4):758-63. PubMed ID: 17671979
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ZDOCK and RDOCK performance in CAPRI rounds 3, 4, and 5.
    Wiehe K; Pierce B; Mintseris J; Tong WW; Anderson R; Chen R; Weng Z
    Proteins; 2005 Aug; 60(2):207-13. PubMed ID: 15981263
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
    Fernández-Recio J; Abagyan R; Totrov M
    Proteins; 2005 Aug; 60(2):308-13. PubMed ID: 15981266
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The performance of ZDOCK and ZRANK in rounds 6-11 of CAPRI.
    Wiehe K; Pierce B; Tong WW; Hwang H; Mintseris J; Weng Z
    Proteins; 2007 Dec; 69(4):719-25. PubMed ID: 17803212
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protein-protein docking: progress in CAPRI rounds 6-12 using a combination of methods: the introduction of steered solvated molecular dynamics.
    Heifetz A; Pal S; Smith GR
    Proteins; 2007 Dec; 69(4):816-22. PubMed ID: 17803214
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Protein-protein docking in CAPRI using ATTRACT to account for global and local flexibility.
    May A; Zacharias M
    Proteins; 2007 Dec; 69(4):774-80. PubMed ID: 17803217
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Docking and scoring protein complexes: CAPRI 3rd Edition.
    Lensink MF; Méndez R; Wodak SJ
    Proteins; 2007 Dec; 69(4):704-18. PubMed ID: 17918726
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Prediction and scoring of docking poses with pyDock.
    Grosdidier S; Pons C; Solernou A; Fernández-Recio J
    Proteins; 2007 Dec; 69(4):852-8. PubMed ID: 17876821
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Implicit flexibility in protein docking: cross-docking and local refinement.
    Król M; Chaleil RA; Tournier AL; Bates PA
    Proteins; 2007 Dec; 69(4):750-7. PubMed ID: 17671977
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Docking of protein molecular surfaces with evolutionary trace analysis.
    Kanamori E; Murakami Y; Tsuchiya Y; Standley DM; Nakamura H; Kinoshita K
    Proteins; 2007 Dec; 69(4):832-8. PubMed ID: 17803239
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protein-protein docking using 3D-Dock in rounds 3, 4, and 5 of CAPRI.
    Carter P; Lesk VI; Islam SA; Sternberg MJ
    Proteins; 2005 Aug; 60(2):281-8. PubMed ID: 15981271
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6-12.
    Chaudhury S; Sircar A; Sivasubramanian A; Berrondo M; Gray JJ
    Proteins; 2007 Dec; 69(4):793-800. PubMed ID: 17894347
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Assessing the energy landscape of CAPRI targets by FunHunt.
    London N; Schueler-Furman O
    Proteins; 2007 Dec; 69(4):809-15. PubMed ID: 17803233
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein docking by the underestimation of free energy funnels in the space of encounter complexes.
    Shen Y; Paschalidis ICh; Vakili P; Vajda S
    PLoS Comput Biol; 2008 Oct; 4(10):e1000191. PubMed ID: 18846200
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ATTRACT: protein-protein docking in CAPRI using a reduced protein model.
    Zacharias M
    Proteins; 2005 Aug; 60(2):252-6. PubMed ID: 15981270
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.
    Méndez R; Leplae R; Lensink MF; Wodak SJ
    Proteins; 2005 Aug; 60(2):150-69. PubMed ID: 15981261
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.