91 related articles for article (PubMed ID: 17877802)
1. A basic analysis toolkit for biological sequences.
Giancarlo R; Siragusa A; Siragusa E; Utro F
Algorithms Mol Biol; 2007 Sep; 2():10. PubMed ID: 17877802
[TBL] [Abstract][Full Text] [Related]
2. libFLASM: a software library for fixed-length approximate string matching.
Ayad LA; Pissis SP; Retha A
BMC Bioinformatics; 2016 Nov; 17(1):454. PubMed ID: 27832739
[TBL] [Abstract][Full Text] [Related]
3. The Bioperl toolkit: Perl modules for the life sciences.
Stajich JE; Block D; Boulez K; Brenner SE; Chervitz SA; Dagdigian C; Fuellen G; Gilbert JG; Korf I; Lapp H; Lehväslaiho H; Matsalla C; Mungall CJ; Osborne BI; Pocock MR; Schattner P; Senger M; Stein LD; Stupka E; Wilkinson MD; Birney E
Genome Res; 2002 Oct; 12(10):1611-8. PubMed ID: 12368254
[TBL] [Abstract][Full Text] [Related]
4. Reconfigurable systems for sequence alignment and for general dynamic programming.
Jacobi RP; Ayala-Rincón M; Carvalho LG; Llanos CH; Hartenstein RW
Genet Mol Res; 2005 Sep; 4(3):543-52. PubMed ID: 16342039
[TBL] [Abstract][Full Text] [Related]
5. A software system for gene sequence database construction based on fast approximate string matching.
Liu Z; Borneman J; Jiang T
Int J Bioinform Res Appl; 2005; 1(3):273-91. PubMed ID: 18048136
[TBL] [Abstract][Full Text] [Related]
6. Combining many multiple alignments in one improved alignment.
Bucka-Lassen K; Caprani O; Hein J
Bioinformatics; 1999 Feb; 15(2):122-30. PubMed ID: 10089197
[TBL] [Abstract][Full Text] [Related]
7. Fast algorithms for approximate circular string matching.
Barton C; Iliopoulos CS; Pissis SP
Algorithms Mol Biol; 2014 Mar; 9(1):9. PubMed ID: 24656145
[TBL] [Abstract][Full Text] [Related]
8. Bi-alignments with affine gaps costs.
Stadler PF; Will S
Algorithms Mol Biol; 2022 May; 17(1):10. PubMed ID: 35578255
[TBL] [Abstract][Full Text] [Related]
9. Calign: aligning sequences with restricted affine gap penalties.
Chao KM
Bioinformatics; 1999 Apr; 15(4):298-304. PubMed ID: 10320397
[TBL] [Abstract][Full Text] [Related]
10. ProClust: improved clustering of protein sequences with an extended graph-based approach.
Pipenbacher P; Schliep A; Schneckener S; Schönhuth A; Schomburg D; Schrader R
Bioinformatics; 2002; 18 Suppl 2():S182-91. PubMed ID: 12386002
[TBL] [Abstract][Full Text] [Related]
11. Multiple sequence alignment with affine gap by using multi-objective genetic algorithm.
Kaya M; Sarhan A; Alhajj R
Comput Methods Programs Biomed; 2014 Apr; 114(1):38-49. PubMed ID: 24534604
[TBL] [Abstract][Full Text] [Related]
12. PTPan--overcoming memory limitations in oligonucleotide string matching for primer/probe design.
Eissler T; Hodges CP; Meier H
Bioinformatics; 2011 Oct; 27(20):2797-805. PubMed ID: 21856736
[TBL] [Abstract][Full Text] [Related]
13. COFFEE: an objective function for multiple sequence alignments.
Notredame C; Holm L; Higgins DG
Bioinformatics; 1998 Jun; 14(5):407-22. PubMed ID: 9682054
[TBL] [Abstract][Full Text] [Related]
14. PR2ALIGN: a stand-alone software program and a web-server for protein sequence alignment using weighted biochemical properties of amino acids.
Kuznetsov IB; McDuffie M
BMC Res Notes; 2015 May; 8():187. PubMed ID: 25947299
[TBL] [Abstract][Full Text] [Related]
15. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
[TBL] [Abstract][Full Text] [Related]
16. Computing posterior probabilities for score-based alignments using ppALIGN.
Wolfsheimer S; Hartmann A; Rabus R; Nuel G
Stat Appl Genet Mol Biol; 2012 May; 11(4):Article 1. PubMed ID: 22628350
[TBL] [Abstract][Full Text] [Related]
17. A generalized affine gap model significantly improves protein sequence alignment accuracy.
Zachariah MA; Crooks GE; Holbrook SR; Brenner SE
Proteins; 2005 Feb; 58(2):329-38. PubMed ID: 15562515
[TBL] [Abstract][Full Text] [Related]
18. A friendly statistics package for microarray analysis.
Sykacek P; Furlong RA; Micklem G
Bioinformatics; 2005 Nov; 21(21):4069-70. PubMed ID: 16188932
[TBL] [Abstract][Full Text] [Related]
19. Cache-oblivious dynamic programming for bioinformatics.
Chowdhury RA; Le HS; Ramachandran V
IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(3):495-510. PubMed ID: 20671320
[TBL] [Abstract][Full Text] [Related]
20. Multiperm: shuffling multiple sequence alignments while approximately preserving dinucleotide frequencies.
Anandam P; Torarinsson E; Ruzzo WL
Bioinformatics; 2009 Mar; 25(5):668-9. PubMed ID: 19136551
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]