224 related articles for article (PubMed ID: 17894332)
1. High accuracy template based modeling by global optimization.
Joo K; Lee J; Lee S; Seo JH; Lee SJ; Lee J
Proteins; 2007; 69 Suppl 8():83-9. PubMed ID: 17894332
[TBL] [Abstract][Full Text] [Related]
2. All-atom chain-building by optimizing MODELLER energy function using conformational space annealing.
Joo K; Lee J; Seo JH; Lee K; Kim BG; Lee J
Proteins; 2009 Jun; 75(4):1010-23. PubMed ID: 19089941
[TBL] [Abstract][Full Text] [Related]
3. Protein structure modeling for CASP10 by multiple layers of global optimization.
Joo K; Lee J; Sim S; Lee SY; Lee K; Heo S; Lee IH; Lee SJ; Lee J
Proteins; 2014 Feb; 82 Suppl 2():188-95. PubMed ID: 23966235
[TBL] [Abstract][Full Text] [Related]
4. Assessment of CASP7 predictions in the high accuracy template-based modeling category.
Read RJ; Chavali G
Proteins; 2007; 69 Suppl 8():27-37. PubMed ID: 17894351
[TBL] [Abstract][Full Text] [Related]
5. The use of automatic tools and human expertise in template-based modeling of CASP8 target proteins.
Venclovas C; Margelevicius M
Proteins; 2009; 77 Suppl 9():81-8. PubMed ID: 19639635
[TBL] [Abstract][Full Text] [Related]
6. Analysis of TASSER-based CASP7 protein structure prediction results.
Zhou H; Pandit SB; Lee SY; Borreguero J; Chen H; Wroblewska L; Skolnick J
Proteins; 2007; 69 Suppl 8():90-7. PubMed ID: 17705276
[TBL] [Abstract][Full Text] [Related]
7. Incorporating knowledge-based biases into an energy-based side-chain modeling method: application to comparative modeling of protein structure.
Mendes J; Nagarajaram HA; Soares CM; Blundell TL; Carrondo MA
Biopolymers; 2001 Aug; 59(2):72-86. PubMed ID: 11373721
[TBL] [Abstract][Full Text] [Related]
8. Template based protein structure modeling by global optimization in CASP11.
Joo K; Joung I; Lee SY; Kim JY; Cheng Q; Manavalan B; Joung JY; Heo S; Lee J; Nam M; Lee IH; Lee SJ; Lee J
Proteins; 2016 Sep; 84 Suppl 1():221-32. PubMed ID: 26329522
[TBL] [Abstract][Full Text] [Related]
9. Methods for accurate homology modeling by global optimization.
Joo K; Lee J; Lee J
Methods Mol Biol; 2012; 857():175-88. PubMed ID: 22323221
[TBL] [Abstract][Full Text] [Related]
10. Template-based modeling and free modeling by I-TASSER in CASP7.
Zhang Y
Proteins; 2007; 69 Suppl 8():108-17. PubMed ID: 17894355
[TBL] [Abstract][Full Text] [Related]
11. SPINFAST: using structure alignment profiles to enhance the accuracy and assess the reliability of protein side-chain modeling.
Poleksic A; Danzer JF; Palmer BA; Olafson BD; Debe DA
Proteins; 2006 Dec; 65(4):953-8. PubMed ID: 17006949
[TBL] [Abstract][Full Text] [Related]
12. Assessment of CASP7 predictions for template-based modeling targets.
Kopp J; Bordoli L; Battey JN; Kiefer F; Schwede T
Proteins; 2007; 69 Suppl 8():38-56. PubMed ID: 17894352
[TBL] [Abstract][Full Text] [Related]
13. Estimating quality of template-based protein models by alignment stability.
Chen H; Kihara D
Proteins; 2008 May; 71(3):1255-74. PubMed ID: 18041762
[TBL] [Abstract][Full Text] [Related]
14. An automated method for modeling proteins on known templates using distance geometry.
Srinivasan S; March CJ; Sudarsanam S
Protein Sci; 1993 Feb; 2(2):277-89. PubMed ID: 8443604
[TBL] [Abstract][Full Text] [Related]
15. An efficient conformational sampling method for homology modeling.
Han R; Leo-Macias A; Zerbino D; Bastolla U; Contreras-Moreira B; Ortiz AR
Proteins; 2008 Apr; 71(1):175-88. PubMed ID: 17985353
[TBL] [Abstract][Full Text] [Related]
16. Domain definition and target classification for CASP7.
Clarke ND; Ezkurdia I; Kopp J; Read RJ; Schwede T; Tress M
Proteins; 2007; 69 Suppl 8():10-8. PubMed ID: 17654725
[TBL] [Abstract][Full Text] [Related]
17. Homology modeling by the ICM method.
Cardozo T; Totrov M; Abagyan R
Proteins; 1995 Nov; 23(3):403-14. PubMed ID: 8710833
[TBL] [Abstract][Full Text] [Related]
18. Automated server predictions in CASP7.
Battey JN; Kopp J; Bordoli L; Read RJ; Clarke ND; Schwede T
Proteins; 2007; 69 Suppl 8():68-82. PubMed ID: 17894354
[TBL] [Abstract][Full Text] [Related]
19. Homology modeling of an RNP domain from a human RNA-binding protein: Homology-constrained energy optimization provides a criterion for distinguishing potential sequence alignments.
Sahasrabudhe PV; Tejero R; Kitao S; Furuichi Y; Montelione GT
Proteins; 1998 Dec; 33(4):558-66. PubMed ID: 9849939
[TBL] [Abstract][Full Text] [Related]
20. Protein-binding site prediction based on three-dimensional protein modeling.
Oh M; Joo K; Lee J
Proteins; 2009; 77 Suppl 9():152-6. PubMed ID: 19768678
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
