BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

170 related articles for article (PubMed ID: 17914227)

  • 1. Identification and annotation of promoter regions in microbial genome sequences on the basis of DNA stability.
    Rangannan V; Bansal M
    J Biosci; 2007 Aug; 32(5):851-62. PubMed ID: 17914227
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress.
    Wang H; Benham CJ
    BMC Bioinformatics; 2006 May; 7():248. PubMed ID: 16677393
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Relative stability of DNA as a generic criterion for promoter prediction: whole genome annotation of microbial genomes with varying nucleotide base composition.
    Rangannan V; Bansal M
    Mol Biosyst; 2009 Dec; 5(12):1758-69. PubMed ID: 19593472
    [TBL] [Abstract][Full Text] [Related]  

  • 4. High-quality annotation of promoter regions for 913 bacterial genomes.
    Rangannan V; Bansal M
    Bioinformatics; 2010 Dec; 26(24):3043-50. PubMed ID: 20956245
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PromBase: a web resource for various genomic features and predicted promoters in prokaryotic genomes.
    Rangannan V; Bansal M
    BMC Res Notes; 2011 Jul; 4():257. PubMed ID: 21781326
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A novel method for prokaryotic promoter prediction based on DNA stability.
    Kanhere A; Bansal M
    BMC Bioinformatics; 2005 Jan; 6():1. PubMed ID: 15631638
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A DNA structural atlas for Escherichia coli.
    Pedersen AG; Jensen LJ; Brunak S; Staerfeldt HH; Ussery DW
    J Mol Biol; 2000 Jun; 299(4):907-30. PubMed ID: 10843847
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Characterization of structural and free energy properties of promoters associated with Primary and Operon TSS in Helicobacter pylori genome and their orthologs.
    Kumar A; Bansal M
    J Biosci; 2012 Jul; 37(3):423-31. PubMed ID: 22750980
    [TBL] [Abstract][Full Text] [Related]  

  • 9. N4: a precise and highly sensitive promoter predictor using neural network fed by nearest neighbors.
    Askary A; Masoudi-Nejad A; Sharafi R; Mizbani A; Parizi SN; Purmasjedi M
    Genes Genet Syst; 2009 Dec; 84(6):425-30. PubMed ID: 20228580
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Coexistence of different base periodicities in prokaryotic genomes as related to DNA curvature, supercoiling, and transcription.
    Kravatskaya GI; Kravatsky YV; Chechetkin VR; Tumanyan VG
    Genomics; 2011 Sep; 98(3):223-31. PubMed ID: 21722724
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Curved DNA in promoter sequences.
    Gabrielian AE; Landsman D; Bolshoy A
    In Silico Biol; 1999-2000; 1(4):183-96. PubMed ID: 11479933
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Eukaryotic and prokaryotic promoter prediction using hybrid approach.
    Lin H; Li QZ
    Theory Biosci; 2011 Jun; 130(2):91-100. PubMed ID: 21046474
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Computational detection of prokaryotic core promoters in genomic sequences.
    Kim KB; Sim JS
    J Microbiol; 2005 Oct; 43(5):411-6. PubMed ID: 16273032
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Recognition of prokaryotic promoters based on a novel variable-window Z-curve method.
    Song K
    Nucleic Acids Res; 2012 Feb; 40(3):963-71. PubMed ID: 21954440
    [TBL] [Abstract][Full Text] [Related]  

  • 15. DNA sequences specifying the transcription of the streptococcal kanamycin resistance gene in Escherichia coli and Bacillus subtilis.
    Trieu-Cuot P; Klier A; Courvalin P
    Mol Gen Genet; 1985; 198(2):348-52. PubMed ID: 3920478
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Selection for unequal densities of sigma70 promoter-like signals in different regions of large bacterial genomes.
    Huerta AM; Francino MP; Morett E; Collado-Vides J
    PLoS Genet; 2006 Nov; 2(11):e185. PubMed ID: 17096598
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Inferring regulatory elements from a whole genome. An analysis of Helicobacter pylori sigma(80) family of promoter signals.
    Vanet A; Marsan L; Labigne A; Sagot MF
    J Mol Biol; 2000 Mar; 297(2):335-53. PubMed ID: 10715205
    [TBL] [Abstract][Full Text] [Related]  

  • 18. TSSUNet-MB - ab initio identification of σ
    Ni CE; Doan DP; Chiu YJ; Huang YH
    Comput Biol Chem; 2023 Aug; 105():107904. PubMed ID: 37327560
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes.
    Liu B; Zhang H; Zhou C; Li G; Fennell A; Wang G; Kang Y; Liu Q; Ma Q
    BMC Genomics; 2016 Aug; 17():578. PubMed ID: 27507169
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Toward Algorithms for Automation of Postgenomic Data Analyses:
    Coelho RV; Dall'Alba G; de Avila E Silva S; Echeverrigaray S; Delamare APL
    OMICS; 2020 May; 24(5):300-309. PubMed ID: 31573385
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.