These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
167 related articles for article (PubMed ID: 17914227)
1. Identification and annotation of promoter regions in microbial genome sequences on the basis of DNA stability. Rangannan V; Bansal M J Biosci; 2007 Aug; 32(5):851-62. PubMed ID: 17914227 [TBL] [Abstract][Full Text] [Related]
2. Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress. Wang H; Benham CJ BMC Bioinformatics; 2006 May; 7():248. PubMed ID: 16677393 [TBL] [Abstract][Full Text] [Related]
3. Relative stability of DNA as a generic criterion for promoter prediction: whole genome annotation of microbial genomes with varying nucleotide base composition. Rangannan V; Bansal M Mol Biosyst; 2009 Dec; 5(12):1758-69. PubMed ID: 19593472 [TBL] [Abstract][Full Text] [Related]
4. High-quality annotation of promoter regions for 913 bacterial genomes. Rangannan V; Bansal M Bioinformatics; 2010 Dec; 26(24):3043-50. PubMed ID: 20956245 [TBL] [Abstract][Full Text] [Related]
5. PromBase: a web resource for various genomic features and predicted promoters in prokaryotic genomes. Rangannan V; Bansal M BMC Res Notes; 2011 Jul; 4():257. PubMed ID: 21781326 [TBL] [Abstract][Full Text] [Related]
6. A novel method for prokaryotic promoter prediction based on DNA stability. Kanhere A; Bansal M BMC Bioinformatics; 2005 Jan; 6():1. PubMed ID: 15631638 [TBL] [Abstract][Full Text] [Related]
8. Characterization of structural and free energy properties of promoters associated with Primary and Operon TSS in Helicobacter pylori genome and their orthologs. Kumar A; Bansal M J Biosci; 2012 Jul; 37(3):423-31. PubMed ID: 22750980 [TBL] [Abstract][Full Text] [Related]
9. N4: a precise and highly sensitive promoter predictor using neural network fed by nearest neighbors. Askary A; Masoudi-Nejad A; Sharafi R; Mizbani A; Parizi SN; Purmasjedi M Genes Genet Syst; 2009 Dec; 84(6):425-30. PubMed ID: 20228580 [TBL] [Abstract][Full Text] [Related]
10. Coexistence of different base periodicities in prokaryotic genomes as related to DNA curvature, supercoiling, and transcription. Kravatskaya GI; Kravatsky YV; Chechetkin VR; Tumanyan VG Genomics; 2011 Sep; 98(3):223-31. PubMed ID: 21722724 [TBL] [Abstract][Full Text] [Related]
11. Curved DNA in promoter sequences. Gabrielian AE; Landsman D; Bolshoy A In Silico Biol; 1999-2000; 1(4):183-96. PubMed ID: 11479933 [TBL] [Abstract][Full Text] [Related]
12. Eukaryotic and prokaryotic promoter prediction using hybrid approach. Lin H; Li QZ Theory Biosci; 2011 Jun; 130(2):91-100. PubMed ID: 21046474 [TBL] [Abstract][Full Text] [Related]
13. Computational detection of prokaryotic core promoters in genomic sequences. Kim KB; Sim JS J Microbiol; 2005 Oct; 43(5):411-6. PubMed ID: 16273032 [TBL] [Abstract][Full Text] [Related]
14. Recognition of prokaryotic promoters based on a novel variable-window Z-curve method. Song K Nucleic Acids Res; 2012 Feb; 40(3):963-71. PubMed ID: 21954440 [TBL] [Abstract][Full Text] [Related]
15. DNA sequences specifying the transcription of the streptococcal kanamycin resistance gene in Escherichia coli and Bacillus subtilis. Trieu-Cuot P; Klier A; Courvalin P Mol Gen Genet; 1985; 198(2):348-52. PubMed ID: 3920478 [TBL] [Abstract][Full Text] [Related]
16. Selection for unequal densities of sigma70 promoter-like signals in different regions of large bacterial genomes. Huerta AM; Francino MP; Morett E; Collado-Vides J PLoS Genet; 2006 Nov; 2(11):e185. PubMed ID: 17096598 [TBL] [Abstract][Full Text] [Related]
17. Inferring regulatory elements from a whole genome. An analysis of Helicobacter pylori sigma(80) family of promoter signals. Vanet A; Marsan L; Labigne A; Sagot MF J Mol Biol; 2000 Mar; 297(2):335-53. PubMed ID: 10715205 [TBL] [Abstract][Full Text] [Related]
18. TSSUNet-MB - ab initio identification of σ Ni CE; Doan DP; Chiu YJ; Huang YH Comput Biol Chem; 2023 Aug; 105():107904. PubMed ID: 37327560 [TBL] [Abstract][Full Text] [Related]
19. An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes. Liu B; Zhang H; Zhou C; Li G; Fennell A; Wang G; Kang Y; Liu Q; Ma Q BMC Genomics; 2016 Aug; 17():578. PubMed ID: 27507169 [TBL] [Abstract][Full Text] [Related]
20. Toward Algorithms for Automation of Postgenomic Data Analyses: Coelho RV; Dall'Alba G; de Avila E Silva S; Echeverrigaray S; Delamare APL OMICS; 2020 May; 24(5):300-309. PubMed ID: 31573385 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]