154 related articles for article (PubMed ID: 17921494)
1. Biclustering as a method for RNA local multiple sequence alignment.
Wang S; Gutell RR; Miranker DP
Bioinformatics; 2007 Dec; 23(24):3289-96. PubMed ID: 17921494
[TBL] [Abstract][Full Text] [Related]
2. Assessing the efficiency of multiple sequence alignment programs.
Pais FS; Ruy PC; Oliveira G; Coimbra RS
Algorithms Mol Biol; 2014 Mar; 9(1):4. PubMed ID: 24602402
[TBL] [Abstract][Full Text] [Related]
3. Improvement in the accuracy of multiple sequence alignment program MAFFT.
Katoh K; Kuma K; Miyata T; Toh H
Genome Inform; 2005; 16(1):22-33. PubMed ID: 16362903
[TBL] [Abstract][Full Text] [Related]
4. Multiple structural alignment and clustering of RNA sequences.
Torarinsson E; Havgaard JH; Gorodkin J
Bioinformatics; 2007 Apr; 23(8):926-32. PubMed ID: 17324941
[TBL] [Abstract][Full Text] [Related]
5. Mind the gaps: evidence of bias in estimates of multiple sequence alignments.
Golubchik T; Wise MJ; Easteal S; Jermiin LS
Mol Biol Evol; 2007 Nov; 24(11):2433-42. PubMed ID: 17709332
[TBL] [Abstract][Full Text] [Related]
6. Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework.
Katoh K; Toh H
BMC Bioinformatics; 2008 Apr; 9():212. PubMed ID: 18439255
[TBL] [Abstract][Full Text] [Related]
7. WMSA: a novel method for multiple sequence alignment of DNA sequences.
Wei Y; Zou Q; Tang F; Yu L
Bioinformatics; 2022 Nov; 38(22):5019-5025. PubMed ID: 36179076
[TBL] [Abstract][Full Text] [Related]
8. A local multiple alignment method for detection of non-coding RNA sequences.
Tabei Y; Asai K
Bioinformatics; 2009 Jun; 25(12):1498-505. PubMed ID: 19376823
[TBL] [Abstract][Full Text] [Related]
9. Recent developments in the MAFFT multiple sequence alignment program.
Katoh K; Toh H
Brief Bioinform; 2008 Jul; 9(4):286-98. PubMed ID: 18372315
[TBL] [Abstract][Full Text] [Related]
10. MAFFT-DASH: integrated protein sequence and structural alignment.
Rozewicki J; Li S; Amada KM; Standley DM; Katoh K
Nucleic Acids Res; 2019 Jul; 47(W1):W5-W10. PubMed ID: 31062021
[TBL] [Abstract][Full Text] [Related]
11. SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments.
Tabei Y; Tsuda K; Kin T; Asai K
Bioinformatics; 2006 Jul; 22(14):1723-9. PubMed ID: 16690634
[TBL] [Abstract][Full Text] [Related]
12. Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost.
Yamada S; Gotoh O; Yamana H
BMC Bioinformatics; 2006 Dec; 7():524. PubMed ID: 17137519
[TBL] [Abstract][Full Text] [Related]
13. A knowledge-based multiple-sequence alignment algorithm.
Nguyen KD; Pan Y
IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(4):884-96. PubMed ID: 24334383
[TBL] [Abstract][Full Text] [Related]
14. Improving model construction of profile HMMs for remote homology detection through structural alignment.
Bernardes JS; Dávila AM; Costa VS; Zaverucha G
BMC Bioinformatics; 2007 Nov; 8():435. PubMed ID: 17999748
[TBL] [Abstract][Full Text] [Related]
15. MAGUS: Multiple sequence Alignment using Graph clUStering.
Smirnov V; Warnow T
Bioinformatics; 2021 Jul; 37(12):1666-1672. PubMed ID: 33252662
[TBL] [Abstract][Full Text] [Related]
16. MANGO: a new approach to multiple sequence alignment.
Zhang Z; Lin H; Li M
Comput Syst Bioinformatics Conf; 2007; 6():237-47. PubMed ID: 17951828
[TBL] [Abstract][Full Text] [Related]
17. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
[TBL] [Abstract][Full Text] [Related]
18. Identifying multiple alignment regions satisfying simple formulas and patterns.
Stojanovic N; Dewar K
Bioinformatics; 2004 Sep; 20(13):2140-2. PubMed ID: 15044226
[TBL] [Abstract][Full Text] [Related]
19. Accurate multiple sequence-structure alignment of RNA sequences using combinatorial optimization.
Bauer M; Klau GW; Reinert K
BMC Bioinformatics; 2007 Jul; 8():271. PubMed ID: 17662141
[TBL] [Abstract][Full Text] [Related]
20. A memory efficient method for structure-based RNA multiple alignment.
DeBlasio D; Bruand J; Zhang S
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):1-11. PubMed ID: 21576754
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]