These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

126 related articles for article (PubMed ID: 17926781)

  • 1. Evaluation of a grid based molecular dynamics approach for polypeptide simulations.
    Merelli I; Morra G; Milanesi L
    IEEE Trans Nanobioscience; 2007 Sep; 6(3):229-34. PubMed ID: 17926781
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Molecular dynamics simulation on a network of workstations using a machine-independent parallel programming language.
    Shifman MA; Windemuth A; Schulten K; Miller PL
    Proc Annu Symp Comput Appl Med Care; 1991; ():414-8. PubMed ID: 1807634
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Using massively parallel simulation and Markovian models to study protein folding: examining the dynamics of the villin headpiece.
    Jayachandran G; Vishal V; Pande VS
    J Chem Phys; 2006 Apr; 124(16):164902. PubMed ID: 16674165
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Molecular dynamics simulation on a network of workstations using a machine-independent parallel programming language.
    Shifman MA; Windemuth A; Schulten K; Miller PL
    Comput Biomed Res; 1992 Apr; 25(2):168-80. PubMed ID: 1582193
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Molecular dynamics with the united-residue model of polypeptide chains. II. Langevin and Berendsen-bath dynamics and tests on model alpha-helical systems.
    Khalili M; Liwo A; Jagielska A; Scheraga HA
    J Phys Chem B; 2005 Jul; 109(28):13798-810. PubMed ID: 16852728
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Ensembler: Enabling High-Throughput Molecular Simulations at the Superfamily Scale.
    Parton DL; Grinaway PB; Hanson SM; Beauchamp KA; Chodera JD
    PLoS Comput Biol; 2016 Jun; 12(6):e1004728. PubMed ID: 27337644
    [TBL] [Abstract][Full Text] [Related]  

  • 7. vmdICE: a plug-in for rapid evaluation of molecular dynamics simulations using VMD.
    Knapp B; Lederer N; Omasits U; Schreiner W
    J Comput Chem; 2010 Dec; 31(16):2868-73. PubMed ID: 20928849
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GRID-MD-A tool for massive simulation of protein channels.
    Carrillo O; Orozco M
    Proteins; 2008 Feb; 70(3):892-9. PubMed ID: 17803238
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Long dynamics simulations of proteins using atomistic force fields and a continuum representation of solvent effects: calculation of structural and dynamic properties.
    Li X; Hassan SA; Mehler EL
    Proteins; 2005 Aug; 60(3):464-84. PubMed ID: 15959866
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The free energy landscape of small peptides as obtained from metadynamics with umbrella sampling corrections.
    Babin V; Roland C; Darden TA; Sagui C
    J Chem Phys; 2006 Nov; 125(20):204909. PubMed ID: 17144742
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
    Hassan SA; Mehler EL; Zhang D; Weinstein H
    Proteins; 2003 Apr; 51(1):109-25. PubMed ID: 12596268
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Short-time dynamics of polypeptides.
    Arashiro E; Drugowich de Felício JR; Hansmann UH
    J Chem Phys; 2007 Jan; 126(4):045107. PubMed ID: 17286517
    [TBL] [Abstract][Full Text] [Related]  

  • 13. On the simulation of protein folding by short time scale molecular dynamics and distributed computing.
    Fersht AR
    Proc Natl Acad Sci U S A; 2002 Oct; 99(22):14122-5. PubMed ID: 12388785
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Peptide folding simulations.
    Gnanakaran S; Nymeyer H; Portman J; Sanbonmatsu KY; García AE
    Curr Opin Struct Biol; 2003 Apr; 13(2):168-74. PubMed ID: 12727509
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Extending molecular dynamics time scales with milestoning: example of complex kinetics in a solvated peptide.
    West AM; Elber R; Shalloway D
    J Chem Phys; 2007 Apr; 126(14):145104. PubMed ID: 17444753
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The use of grid computing to drive data-intensive genetic research.
    Andrade J; Andersen M; Sillén A; Graff C; Odeberg J
    Eur J Hum Genet; 2007 Jun; 15(6):694-702. PubMed ID: 17377522
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Accounting for the kinetics in order parameter analysis: lessons from theoretical models and a disordered peptide.
    Berezovska G; Prada-Gracia D; Mostarda S; Rao F
    J Chem Phys; 2012 Nov; 137(19):194101. PubMed ID: 23181288
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A Flexible, Grid-Enabled Web Portal for GROMACS Molecular Dynamics Simulations.
    van Dijk M; Wassenaar TA; Bonvin AM
    J Chem Theory Comput; 2012 Oct; 8(10):3463-72. PubMed ID: 26592996
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Molecular dynamics with the united-residue model of polypeptide chains. I. Lagrange equations of motion and tests of numerical stability in the microcanonical mode.
    Khalili M; Liwo A; Rakowski F; Grochowski P; Scheraga HA
    J Phys Chem B; 2005 Jul; 109(28):13785-97. PubMed ID: 16852727
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Reproducible polypeptide folding and structure prediction using molecular dynamics simulations.
    Seibert MM; Patriksson A; Hess B; van der Spoel D
    J Mol Biol; 2005 Nov; 354(1):173-83. PubMed ID: 16236315
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.