496 related articles for article (PubMed ID: 17932080)
1. Discovering and detecting transposable elements in genome sequences.
Bergman CM; Quesneville H
Brief Bioinform; 2007 Nov; 8(6):382-92. PubMed ID: 17932080
[TBL] [Abstract][Full Text] [Related]
2. Roadmap for annotating transposable elements in eukaryote genomes.
Permal E; Flutre T; Quesneville H
Methods Mol Biol; 2012; 859():53-68. PubMed ID: 22367865
[TBL] [Abstract][Full Text] [Related]
3. Homology assessment and molecular sequence alignment.
Phillips AJ
J Biomed Inform; 2006 Feb; 39(1):18-33. PubMed ID: 16380300
[TBL] [Abstract][Full Text] [Related]
4. Indelign: a probabilistic framework for annotation of insertions and deletions in a multiple alignment.
Kim J; Sinha S
Bioinformatics; 2007 Feb; 23(3):289-97. PubMed ID: 17110370
[TBL] [Abstract][Full Text] [Related]
5. Discovery of regulatory elements in vertebrates through comparative genomics.
Prakash A; Tompa M
Nat Biotechnol; 2005 Oct; 23(10):1249-56. PubMed ID: 16211068
[TBL] [Abstract][Full Text] [Related]
6. Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets.
Buisine N; Quesneville H; Colot V
Genomics; 2008 May; 91(5):467-75. PubMed ID: 18343092
[TBL] [Abstract][Full Text] [Related]
7. A novel feature-based method for whole genome phylogenetic analysis without alignment: application to HEV genotyping and subtyping.
Liu Z; Meng J; Sun X
Biochem Biophys Res Commun; 2008 Apr; 368(2):223-30. PubMed ID: 18230342
[TBL] [Abstract][Full Text] [Related]
8. Domain organization within repeated DNA sequences: application to the study of a family of transposable elements.
Tempel S; Giraud M; Lavenier D; Lerman IC; Valin AS; Couée I; Amrani AE; Nicolas J
Bioinformatics; 2006 Aug; 22(16):1948-54. PubMed ID: 16809391
[TBL] [Abstract][Full Text] [Related]
9. Combined evidence annotation of transposable elements in genome sequences.
Quesneville H; Bergman CM; Andrieu O; Autard D; Nouaud D; Ashburner M; Anxolabehere D
PLoS Comput Biol; 2005 Jul; 1(2):166-75. PubMed ID: 16110336
[TBL] [Abstract][Full Text] [Related]
10. Analysis of transposable element sequences using CENSOR and RepeatMasker.
Huda A; Jordan IK
Methods Mol Biol; 2009; 537():323-36. PubMed ID: 19378152
[TBL] [Abstract][Full Text] [Related]
11. Genome resequencing and genetic variation.
Stratton M
Nat Biotechnol; 2008 Jan; 26(1):65-6. PubMed ID: 18183021
[No Abstract] [Full Text] [Related]
12. Indel seeds for homology search.
Mak D; Gelfand Y; Benson G
Bioinformatics; 2006 Jul; 22(14):e341-9. PubMed ID: 16873491
[TBL] [Abstract][Full Text] [Related]
13. Inferring horizontal transfers in the presence of rearrangements by the minimum evolution criterion.
Birin H; Gal-Or Z; Elias I; Tuller T
Bioinformatics; 2008 Mar; 24(6):826-32. PubMed ID: 18203769
[TBL] [Abstract][Full Text] [Related]
14. Bats with hATs: evidence for recent DNA transposon activity in genus Myotis.
Ray DA; Pagan HJ; Thompson ML; Stevens RD
Mol Biol Evol; 2007 Mar; 24(3):632-9. PubMed ID: 17150974
[TBL] [Abstract][Full Text] [Related]
15. High-resolution insertion-site analysis by linear amplification-mediated PCR (LAM-PCR).
Schmidt M; Schwarzwaelder K; Bartholomae C; Zaoui K; Ball C; Pilz I; Braun S; Glimm H; von Kalle C
Nat Methods; 2007 Dec; 4(12):1051-7. PubMed ID: 18049469
[TBL] [Abstract][Full Text] [Related]
16. Identification of transposable elements using multiple alignments of related genomes.
Caspi A; Pachter L
Genome Res; 2006 Feb; 16(2):260-70. PubMed ID: 16354754
[TBL] [Abstract][Full Text] [Related]
17. VisGenome: visualization of single and comparative genome representations.
Jakubowska J; Hunt E; Chalmers M; McBride M; Dominiczak AF
Bioinformatics; 2007 Oct; 23(19):2641-2. PubMed ID: 17965437
[TBL] [Abstract][Full Text] [Related]
18. Transposable element annotation of the rice genome.
Juretic N; Bureau TE; Bruskiewich RM
Bioinformatics; 2004 Jan; 20(2):155-60. PubMed ID: 14734305
[TBL] [Abstract][Full Text] [Related]
19. HomologMiner: looking for homologous genomic groups in whole genomes.
Hou M; Berman P; Hsu CH; Harris RS
Bioinformatics; 2007 Apr; 23(8):917-25. PubMed ID: 17308341
[TBL] [Abstract][Full Text] [Related]
20. Annotation confidence score for genome annotation: a genome comparison approach.
Yang Y; Gilbert D; Kim S
Bioinformatics; 2010 Jan; 26(1):22-9. PubMed ID: 19855104
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]