BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

106 related articles for article (PubMed ID: 17946928)

  • 21. Comparative footprinting of DNA-binding proteins.
    Contreras-Moreira B; Collado-Vides J
    Bioinformatics; 2006 Jul; 22(14):e74-80. PubMed ID: 16873524
    [TBL] [Abstract][Full Text] [Related]  

  • 22. PSSM-based prediction of DNA binding sites in proteins.
    Ahmad S; Sarai A
    BMC Bioinformatics; 2005 Feb; 6():33. PubMed ID: 15720719
    [TBL] [Abstract][Full Text] [Related]  

  • 23. New scoring schema for finding motifs in DNA Sequences.
    Zare-Mirakabad F; Ahrabian H; Sadeghi M; Nowzari-Dalini A; Goliaei B
    BMC Bioinformatics; 2009 Mar; 10():93. PubMed ID: 19302709
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Non-additivity in protein-DNA binding.
    O'Flanagan RA; Paillard G; Lavery R; Sengupta AM
    Bioinformatics; 2005 May; 21(10):2254-63. PubMed ID: 15746285
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Probabilistic models for semisupervised discriminative motif discovery in DNA sequences.
    Kim JK; Choi S
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(5):1309-17. PubMed ID: 21778525
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Predicting transcription factor affinities to DNA from a biophysical model.
    Roider HG; Kanhere A; Manke T; Vingron M
    Bioinformatics; 2007 Jan; 23(2):134-41. PubMed ID: 17098775
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Discovery and information-theoretic characterization of transcription factor binding sites that act cooperatively.
    Clifford J; Adami C
    Phys Biol; 2015 Sep; 12(5):056004. PubMed ID: 26331781
    [TBL] [Abstract][Full Text] [Related]  

  • 28. An equilibrium partitioning model connecting gene expression and cis-motif content.
    Mellor J; DeLisi C
    Bioinformatics; 2006 Jul; 22(14):e368-74. PubMed ID: 16873495
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Evolutionary conservation of DNA-contact residues in DNA-binding domains.
    Chang YL; Tsai HK; Kao CY; Chen YC; Hu YJ; Yang JM
    BMC Bioinformatics; 2008 May; 9 Suppl 6(Suppl 6):S3. PubMed ID: 18541056
    [TBL] [Abstract][Full Text] [Related]  

  • 30. BLISS: binding site level identification of shared signal-modules in DNA regulatory sequences.
    Meng H; Banerjee A; Zhou L
    BMC Bioinformatics; 2006 Jun; 7():287. PubMed ID: 16756683
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.
    Foat BC; Morozov AV; Bussemaker HJ
    Bioinformatics; 2006 Jul; 22(14):e141-9. PubMed ID: 16873464
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Quantitative methods of analysis of footprinting diagrams for the complexes formed by a ligand and a DNA fragment of known sequence.
    Ryabokon VF; Nechipurenko YD; Gurskii GV
    Dokl Biochem Biophys; 2004; 398():329-33. PubMed ID: 15584521
    [No Abstract]   [Full Text] [Related]  

  • 33. CIS: compound importance sampling method for protein-DNA binding site p-value estimation.
    Barash Y; Elidan G; Kaplan T; Friedman N
    Bioinformatics; 2005 Mar; 21(5):596-600. PubMed ID: 15454407
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Alignment-free clustering of transcription factor binding motifs using a genetic-k-medoids approach.
    Broin PÓ; Smith TJ; Golden AA
    BMC Bioinformatics; 2015 Jan; 16():22. PubMed ID: 25627106
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Development of coarse-graining DNA models for single-nucleotide resolution analysis.
    Doi K; Haga T; Shintaku H; Kawano S
    Philos Trans A Math Phys Eng Sci; 2010 Jun; 368(1920):2615-28. PubMed ID: 20439265
    [TBL] [Abstract][Full Text] [Related]  

  • 36. A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites.
    Naughton BT; Fratkin E; Batzoglou S; Brutlag DL
    Nucleic Acids Res; 2006; 34(20):5730-9. PubMed ID: 17041233
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Statistical modeling of transcription factor binding affinities predicts regulatory interactions.
    Manke T; Roider HG; Vingron M
    PLoS Comput Biol; 2008 Mar; 4(3):e1000039. PubMed ID: 18369429
    [TBL] [Abstract][Full Text] [Related]  

  • 38. DNA motif representation with nucleotide dependency.
    Chin F; Leung HC
    IEEE/ACM Trans Comput Biol Bioinform; 2008; 5(1):110-9. PubMed ID: 18245880
    [TBL] [Abstract][Full Text] [Related]  

  • 39. A subspace method for the detection of transcription factor binding sites.
    Pairó E; Maynou J; Marco S; Perera A
    Bioinformatics; 2012 May; 28(10):1328-35. PubMed ID: 22467907
    [TBL] [Abstract][Full Text] [Related]  

  • 40. DNA viewed as an out-of-equilibrium structure.
    Provata A; Nicolis C; Nicolis G
    Phys Rev E Stat Nonlin Soft Matter Phys; 2014 May; 89(5):052105. PubMed ID: 25353737
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.