137 related articles for article (PubMed ID: 17951844)
1. Improving the design of genechip arrays by combining placement and embedding.
de Carvalho SA; Rahmann S
Comput Syst Bioinformatics Conf; 2007; 6():417-27. PubMed ID: 17951844
[TBL] [Abstract][Full Text] [Related]
2. Better genechip microarray layouts by combining probe placement and embedding.
de Carvalho SA; Rahmann S
J Bioinform Comput Biol; 2008 Jun; 6(3):623-41. PubMed ID: 18574866
[TBL] [Abstract][Full Text] [Related]
3. A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.
Alberts R; Terpstra P; Hardonk M; Bystrykh LV; de Haan G; Breitling R; Nap JP; Jansen RC
BMC Bioinformatics; 2007 Apr; 8():132. PubMed ID: 17448222
[TBL] [Abstract][Full Text] [Related]
4. Alternative mRNA polyadenylation can potentially affect detection of gene expression by affymetrix genechip arrays.
D'mello V; Lee JY; MacDonald CC; Tian B
Appl Bioinformatics; 2006; 5(4):249-53. PubMed ID: 17140271
[TBL] [Abstract][Full Text] [Related]
5. Characterization of mismatch and high-signal intensity probes associated with Affymetrix genechips.
Wang Y; Miao ZH; Pommier Y; Kawasaki ES; Player A
Bioinformatics; 2007 Aug; 23(16):2088-95. PubMed ID: 17553856
[TBL] [Abstract][Full Text] [Related]
6. Comparisons of annotation predictions for affymetrix GeneChips.
Stalteri M; Harrison A
Appl Bioinformatics; 2006; 5(4):237-48. PubMed ID: 17140270
[TBL] [Abstract][Full Text] [Related]
7. Fast and sensitive probe selection for DNA chips using jumps in matching statistics.
Rahmann S
Proc IEEE Comput Soc Bioinform Conf; 2003; 2():57-64. PubMed ID: 16452779
[TBL] [Abstract][Full Text] [Related]
8. Selecting signature oligonucleotides to identify organisms using DNA arrays.
Kaderali L; Schliep A
Bioinformatics; 2002 Oct; 18(10):1340-9. PubMed ID: 12376378
[TBL] [Abstract][Full Text] [Related]
9. Fast and accurate probe selection algorithm for large genomes.
Sung WK; Lee WH
Proc IEEE Comput Soc Bioinform Conf; 2003; 2():65-74. PubMed ID: 16452780
[TBL] [Abstract][Full Text] [Related]
10. Assessing the need for sequence-based normalization in tiling microarray experiments.
Royce TE; Rozowsky JS; Gerstein MB
Bioinformatics; 2007 Apr; 23(8):988-97. PubMed ID: 17387113
[TBL] [Abstract][Full Text] [Related]
11. CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays.
Kong SW; Hwang KB; Kim RD; Zhang BT; Greenberg SA; Kohane IS; Park PJ
Bioinformatics; 2005 May; 21(9):2116-7. PubMed ID: 15684227
[TBL] [Abstract][Full Text] [Related]
12. An application for assessing quality of RNA hybridized to Affymetrix GeneChips.
Archer KJ; Guennel T
Bioinformatics; 2006 Nov; 22(21):2699-701. PubMed ID: 16935927
[TBL] [Abstract][Full Text] [Related]
13. Optimization of probe coverage for high-resolution oligonucleotide aCGH.
Lipson D; Yakhini Z; Aumann Y
Bioinformatics; 2007 Jan; 23(2):e77-83. PubMed ID: 17237109
[TBL] [Abstract][Full Text] [Related]
14. Avoiding inconsistencies over time and tracking difficulties in Applied Biosystems AB1700/Panther probe-to-gene annotations.
Noth S; Benecke A;
BMC Bioinformatics; 2005 Dec; 6():307. PubMed ID: 16372901
[TBL] [Abstract][Full Text] [Related]
15. In silico gene selection strategy for custom microarray design.
Dondeti VR; Sipe CW; Saha MS
Biotechniques; 2004 Nov; 37(5):768-70, 772, 774-6. PubMed ID: 15560133
[TBL] [Abstract][Full Text] [Related]
16. High-density genechip oligonucleotide probe arrays.
McGall GH; Christians FC
Adv Biochem Eng Biotechnol; 2002; 77():21-42. PubMed ID: 12227735
[TBL] [Abstract][Full Text] [Related]
17. A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database.
Katz S; Irizarry RA; Lin X; Tripputi M; Porter MW
BMC Bioinformatics; 2006 Oct; 7():464. PubMed ID: 17059591
[TBL] [Abstract][Full Text] [Related]
18. DNA self-polymers as microarray probes improve assay sensitivity.
Hollingshead D; Korade Z; Lewis DA; Levitt P; Mirnics K
J Neurosci Methods; 2006 Mar; 151(2):216-23. PubMed ID: 16165216
[TBL] [Abstract][Full Text] [Related]
19. PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis.
Xu D; Li G; Wu L; Zhou J; Xu Y
Bioinformatics; 2002 Nov; 18(11):1432-7. PubMed ID: 12424113
[TBL] [Abstract][Full Text] [Related]
20. ALEXA: a microarray design platform for alternative expression analysis.
Griffith M; Tang MJ; Griffith OL; Morin RD; Chan SY; Asano JK; Zeng T; Flibotte S; Ally A; Baross A; Hirst M; Jones SJ; Morin GB; Tai IT; Marra MA
Nat Methods; 2008 Feb; 5(2):118. PubMed ID: 18235430
[No Abstract] [Full Text] [Related]
[Next] [New Search]
