242 related articles for article (PubMed ID: 17957766)
1. Contact rearrangements form coupled networks from local motions in allosteric proteins.
Daily MD; Upadhyaya TJ; Gray JJ
Proteins; 2008 Apr; 71(1):455-66. PubMed ID: 17957766
[TBL] [Abstract][Full Text] [Related]
2. Allosteric communication occurs via networks of tertiary and quaternary motions in proteins.
Daily MD; Gray JJ
PLoS Comput Biol; 2009 Feb; 5(2):e1000293. PubMed ID: 19229311
[TBL] [Abstract][Full Text] [Related]
3. Local motions in a benchmark of allosteric proteins.
Daily MD; Gray JJ
Proteins; 2007 May; 67(2):385-99. PubMed ID: 17295319
[TBL] [Abstract][Full Text] [Related]
4. Computational Analysis of Residue Interaction Networks and Coevolutionary Relationships in the Hsp70 Chaperones: A Community-Hopping Model of Allosteric Regulation and Communication.
Stetz G; Verkhivker GM
PLoS Comput Biol; 2017 Jan; 13(1):e1005299. PubMed ID: 28095400
[TBL] [Abstract][Full Text] [Related]
5. Allosteric pathway identification through network analysis: from molecular dynamics simulations to interactive 2D and 3D graphs.
Allain A; Chauvot de Beauchêne I; Langenfeld F; Guarracino Y; Laine E; Tchertanov L
Faraday Discuss; 2014; 169():303-21. PubMed ID: 25340971
[TBL] [Abstract][Full Text] [Related]
6. Motions of Allosteric and Orthosteric Ligand-Binding Sites in Proteins are Highly Correlated.
Ma X; Meng H; Lai L
J Chem Inf Model; 2016 Sep; 56(9):1725-33. PubMed ID: 27580047
[TBL] [Abstract][Full Text] [Related]
7. Correlating allostery with rigidity.
Rader AJ; Brown SM
Mol Biosyst; 2011 Feb; 7(2):464-71. PubMed ID: 21060909
[TBL] [Abstract][Full Text] [Related]
8. Calculated pKa Variations Expose Dynamic Allosteric Communication Networks.
Lang EJ; Heyes LC; Jameson GB; Parker EJ
J Am Chem Soc; 2016 Feb; 138(6):2036-45. PubMed ID: 26794122
[TBL] [Abstract][Full Text] [Related]
9. Probing Protein Allostery as a Residue-Specific Concept via Residue Response Maps.
Hayatshahi HS; Ahuactzin E; Tao P; Wang S; Liu J
J Chem Inf Model; 2019 Nov; 59(11):4691-4705. PubMed ID: 31589429
[TBL] [Abstract][Full Text] [Related]
10. Identification of potential allosteric communication pathways between functional sites of the bacterial ribosome by graph and elastic network models.
Guzel P; Kurkcuoglu O
Biochim Biophys Acta Gen Subj; 2017 Dec; 1861(12):3131-3141. PubMed ID: 28917952
[TBL] [Abstract][Full Text] [Related]
11. Sequence-dependent model of allosteric communication.
Guarnera E; Berezovsky IN
J Chem Phys; 2023 Apr; 158(13):135101. PubMed ID: 37031128
[TBL] [Abstract][Full Text] [Related]
12. A geometry-based generic predictor for catalytic and allosteric sites.
Mitternacht S; Berezovsky IN
Protein Eng Des Sel; 2011 Apr; 24(4):405-9. PubMed ID: 21159618
[TBL] [Abstract][Full Text] [Related]
13. Binding leverage as a molecular basis for allosteric regulation.
Mitternacht S; Berezovsky IN
PLoS Comput Biol; 2011 Sep; 7(9):e1002148. PubMed ID: 21935347
[TBL] [Abstract][Full Text] [Related]
14. Prediction of allosteric communication pathways in proteins.
Haliloglu T; Hacisuleyman A; Erman B
Bioinformatics; 2022 Jul; 38(14):3590-3599. PubMed ID: 35674396
[TBL] [Abstract][Full Text] [Related]
15. Sparse networks of directly coupled, polymorphic, and functional side chains in allosteric proteins.
Soltan Ghoraie L; Burkowski F; Zhu M
Proteins; 2015 Mar; 83(3):497-516. PubMed ID: 25545075
[TBL] [Abstract][Full Text] [Related]
16. Structure-based network analysis of activation mechanisms in the ErbB family of receptor tyrosine kinases: the regulatory spine residues are global mediators of structural stability and allosteric interactions.
James KA; Verkhivker GM
PLoS One; 2014; 9(11):e113488. PubMed ID: 25427151
[TBL] [Abstract][Full Text] [Related]
17. Residue-Residue Contact Changes during Functional Processes Define Allosteric Communication Pathways.
Yao XQ; Hamelberg D
J Chem Theory Comput; 2022 Feb; 18(2):1173-1187. PubMed ID: 35048691
[TBL] [Abstract][Full Text] [Related]
18. Structure-based predictive models for allosteric hot spots.
Demerdash ON; Daily MD; Mitchell JC
PLoS Comput Biol; 2009 Oct; 5(10):e1000531. PubMed ID: 19816556
[TBL] [Abstract][Full Text] [Related]
19. Identification of an Evolutionarily Conserved Allosteric Network in Steroid Receptors.
Dube N; Khan SH; Sasse R; Okafor CD
J Chem Inf Model; 2023 Jan; 63(2):571-582. PubMed ID: 36594606
[TBL] [Abstract][Full Text] [Related]
20. Dancing through Life: Molecular Dynamics Simulations and Network-Centric Modeling of Allosteric Mechanisms in Hsp70 and Hsp110 Chaperone Proteins.
Stetz G; Verkhivker GM
PLoS One; 2015; 10(11):e0143752. PubMed ID: 26619280
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
