1028 related articles for article (PubMed ID: 17984079)
1. BioMagResBank.
Ulrich EL; Akutsu H; Doreleijers JF; Harano Y; Ioannidis YE; Lin J; Livny M; Mading S; Maziuk D; Miller Z; Nakatani E; Schulte CF; Tolmie DE; Kent Wenger R; Yao H; Markley JL
Nucleic Acids Res; 2008 Jan; 36(Database issue):D402-8. PubMed ID: 17984079
[TBL] [Abstract][Full Text] [Related]
2. BioMagResBank (BMRB) as a Resource for Structural Biology.
Romero PR; Kobayashi N; Wedell JR; Baskaran K; Iwata T; Yokochi M; Maziuk D; Yao H; Fujiwara T; Kurusu G; Ulrich EL; Hoch JC; Markley JL
Methods Mol Biol; 2020; 2112():187-218. PubMed ID: 32006287
[TBL] [Abstract][Full Text] [Related]
3. The Protein Data Bank Archive.
Velankar S; Burley SK; Kurisu G; Hoch JC; Markley JL
Methods Mol Biol; 2021; 2305():3-21. PubMed ID: 33950382
[TBL] [Abstract][Full Text] [Related]
4. BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions.
Markley JL; Ulrich EL; Berman HM; Henrick K; Nakamura H; Akutsu H
J Biomol NMR; 2008 Mar; 40(3):153-5. PubMed ID: 18288446
[TBL] [Abstract][Full Text] [Related]
5. Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive.
Burley SK; Berman HM; Kleywegt GJ; Markley JL; Nakamura H; Velankar S
Methods Mol Biol; 2017; 1607():627-641. PubMed ID: 28573592
[TBL] [Abstract][Full Text] [Related]
6. Remediation of the protein data bank archive.
Henrick K; Feng Z; Bluhm WF; Dimitropoulos D; Doreleijers JF; Dutta S; Flippen-Anderson JL; Ionides J; Kamada C; Krissinel E; Lawson CL; Markley JL; Nakamura H; Newman R; Shimizu Y; Swaminathan J; Velankar S; Ory J; Ulrich EL; Vranken W; Westbrook J; Yamashita R; Yang H; Young J; Yousufuddin M; Berman HM
Nucleic Acids Res; 2008 Jan; 36(Database issue):D426-33. PubMed ID: 18073189
[TBL] [Abstract][Full Text] [Related]
7. BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank.
Doreleijers JF; Mading S; Maziuk D; Sojourner K; Yin L; Zhu J; Markley JL; Ulrich EL
J Biomol NMR; 2003 Jun; 26(2):139-46. PubMed ID: 12766409
[TBL] [Abstract][Full Text] [Related]
8. nightshift: A Python program for plotting simulated NMR spectra from assigned chemical shifts from the Biological Magnetic Resonance Data Bank.
Fucci IJ; Byrd RA
Protein Sci; 2022 Jan; 31(1):63-74. PubMed ID: 34516045
[TBL] [Abstract][Full Text] [Related]
9. Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins.
Yokochi M; Kobayashi N; Ulrich EL; Kinjo AR; Iwata T; Ioannidis YE; Livny M; Markley JL; Nakamura H; Kojima C; Fujiwara T
J Biomed Semantics; 2016 May; 7(1):16. PubMed ID: 27927232
[TBL] [Abstract][Full Text] [Related]
10. New bioinformatics resources for metabolomics.
Markley JL; Anderson ME; Cui Q; Eghbalnia HR; Lewis IA; Hegeman AD; Li J; Schulte CF; Sussman MR; Westler WM; Ulrich EL; Zolnai Z
Pac Symp Biocomput; 2007; ():157-68. PubMed ID: 17990489
[TBL] [Abstract][Full Text] [Related]
11. The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data.
Berman H; Henrick K; Nakamura H; Markley JL
Nucleic Acids Res; 2007 Jan; 35(Database issue):D301-3. PubMed ID: 17142228
[TBL] [Abstract][Full Text] [Related]
12. OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive.
Young JY; Westbrook JD; Feng Z; Sala R; Peisach E; Oldfield TJ; Sen S; Gutmanas A; Armstrong DR; Berrisford JM; Chen L; Chen M; Di Costanzo L; Dimitropoulos D; Gao G; Ghosh S; Gore S; Guranovic V; Hendrickx PMS; Hudson BP; Igarashi R; Ikegawa Y; Kobayashi N; Lawson CL; Liang Y; Mading S; Mak L; Mir MS; Mukhopadhyay A; Patwardhan A; Persikova I; Rinaldi L; Sanz-Garcia E; Sekharan MR; Shao C; Swaminathan GJ; Tan L; Ulrich EL; van Ginkel G; Yamashita R; Yang H; Zhuravleva MA; Quesada M; Kleywegt GJ; Berman HM; Markley JL; Nakamura H; Velankar S; Burley SK
Structure; 2017 Mar; 25(3):536-545. PubMed ID: 28190782
[TBL] [Abstract][Full Text] [Related]
13. Biological Magnetic Resonance Data Bank.
Hoch JC; Baskaran K; Burr H; Chin J; Eghbalnia HR; Fujiwara T; Gryk MR; Iwata T; Kojima C; Kurisu G; Maziuk D; Miyanoiri Y; Wedell JR; Wilburn C; Yao H; Yokochi M
Nucleic Acids Res; 2023 Jan; 51(D1):D368-D376. PubMed ID: 36478084
[TBL] [Abstract][Full Text] [Related]
14. New tools and functions in data-out activities at Protein Data Bank Japan (PDBj).
Kinjo AR; Bekker GJ; Wako H; Endo S; Tsuchiya Y; Sato H; Nishi H; Kinoshita K; Suzuki H; Kawabata T; Yokochi M; Iwata T; Kobayashi N; Fujiwara T; Kurisu G; Nakamura H
Protein Sci; 2018 Jan; 27(1):95-102. PubMed ID: 28815765
[TBL] [Abstract][Full Text] [Related]
15. A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank.
Smelter A; Astra M; Moseley HN
BMC Bioinformatics; 2017 Mar; 18(1):175. PubMed ID: 28302053
[TBL] [Abstract][Full Text] [Related]
16. Three-dimensional Structure Databases of Biological Macromolecules.
Waman VP; Orengo C; Kleywegt GJ; Lesk AM
Methods Mol Biol; 2022; 2449():43-91. PubMed ID: 35507259
[TBL] [Abstract][Full Text] [Related]
17. Validation of archived chemical shifts through atomic coordinates.
Rieping W; Vranken WF
Proteins; 2010 Aug; 78(11):2482-9. PubMed ID: 20602353
[TBL] [Abstract][Full Text] [Related]
18. SPINS: standardized protein NMR storage. A data dictionary and object-oriented relational database for archiving protein NMR spectra.
Baran MC; Moseley HN; Sahota G; Montelione GT
J Biomol NMR; 2002 Oct; 24(2):113-21. PubMed ID: 12495027
[TBL] [Abstract][Full Text] [Related]
19. The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries.
Doreleijers JF; Vranken WF; Schulte C; Lin J; Wedell JR; Penkett CJ; Vuister GW; Vriend G; Markley JL; Ulrich EL
J Biomol NMR; 2009 Dec; 45(4):389-96. PubMed ID: 19809795
[TBL] [Abstract][Full Text] [Related]
20. Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format.
Kinjo AR; Suzuki H; Yamashita R; Ikegawa Y; Kudou T; Igarashi R; Kengaku Y; Cho H; Standley DM; Nakagawa A; Nakamura H
Nucleic Acids Res; 2012 Jan; 40(Database issue):D453-60. PubMed ID: 21976737
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]