These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
175 related articles for article (PubMed ID: 17990975)
1. MSOAR: a high-throughput ortholog assignment system based on genome rearrangement. Fu Z; Chen X; Vacic V; Nan P; Zhong Y; Jiang T J Comput Biol; 2007 Nov; 14(9):1160-75. PubMed ID: 17990975 [TBL] [Abstract][Full Text] [Related]
2. Assignment of orthologous genes via genome rearrangement. Chen X; Zheng J; Fu Z; Nan P; Zhong Y; Lonardi S; Jiang T IEEE/ACM Trans Comput Biol Bioinform; 2005; 2(4):302-15. PubMed ID: 17044168 [TBL] [Abstract][Full Text] [Related]
3. MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement. Shi G; Zhang L; Jiang T BMC Bioinformatics; 2010 Jan; 11():10. PubMed ID: 20053291 [TBL] [Abstract][Full Text] [Related]
4. Clustering of main orthologs for multiple genomes. Fu Z; Jiang T Comput Syst Bioinformatics Conf; 2007; 6():195-201. PubMed ID: 17951824 [TBL] [Abstract][Full Text] [Related]
5. Clustering of main orthologs for multiple genomes. Fu Z; Jiang T J Bioinform Comput Biol; 2008 Jun; 6(3):573-84. PubMed ID: 18574863 [TBL] [Abstract][Full Text] [Related]
6. MultiMSOAR 2.0: an accurate tool to identify ortholog groups among multiple genomes. Shi G; Peng MC; Jiang T PLoS One; 2011; 6(6):e20892. PubMed ID: 21712981 [TBL] [Abstract][Full Text] [Related]
7. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. Remm M; Storm CE; Sonnhammer EL J Mol Biol; 2001 Dec; 314(5):1041-52. PubMed ID: 11743721 [TBL] [Abstract][Full Text] [Related]
8. Accurate identification of orthologous segments among multiple genomes. Hachiya T; Osana Y; Popendorf K; Sakakibara Y Bioinformatics; 2009 Apr; 25(7):853-60. PubMed ID: 19188192 [TBL] [Abstract][Full Text] [Related]
10. Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs. Zheng XH; Lu F; Wang ZY; Zhong F; Hoover J; Mural R Bioinformatics; 2005 Mar; 21(6):703-10. PubMed ID: 15458983 [TBL] [Abstract][Full Text] [Related]
11. DODO: an efficient orthologous genes assignment tool based on domain architectures. Domain based ortholog detection. Chen TW; Wu TH; Ng WV; Lin WC BMC Bioinformatics; 2010 Oct; 11 Suppl 7(Suppl 7):S6. PubMed ID: 21106128 [TBL] [Abstract][Full Text] [Related]
12. Automatic clustering of orthologs and inparalogs shared by multiple proteomes. Alexeyenko A; Tamas I; Liu G; Sonnhammer EL Bioinformatics; 2006 Jul; 22(14):e9-15. PubMed ID: 16873526 [TBL] [Abstract][Full Text] [Related]
13. A Fast and Exact Algorithm for the Exemplar Breakpoint Distance. Shao M; Moret BM J Comput Biol; 2016 May; 23(5):337-46. PubMed ID: 26953781 [TBL] [Abstract][Full Text] [Related]
15. Computational tools for the analysis of rearrangements in mammalian genomes. Bourque G; Tesler G Methods Mol Biol; 2008; 452():431-55. PubMed ID: 18566776 [TBL] [Abstract][Full Text] [Related]
16. An Exact Algorithm to Compute the Double-Cut-and-Join Distance for Genomes with Duplicate Genes. Shao M; Lin Y; Moret BM J Comput Biol; 2015 May; 22(5):425-35. PubMed ID: 25517208 [TBL] [Abstract][Full Text] [Related]
17. Computational tools for the analysis of rearrangements in mammalian genomes. Tesler G; Bourque G Methods Mol Biol; 2008; 422():145-70. PubMed ID: 18629666 [TBL] [Abstract][Full Text] [Related]
18. Identification of mammalian orthologs using local synteny. Jun J; Mandoiu II; Nelson CE BMC Genomics; 2009 Dec; 10():630. PubMed ID: 20030836 [TBL] [Abstract][Full Text] [Related]
19. Genome rearrangements in mammalian evolution: lessons from human and mouse genomes. Pevzner P; Tesler G Genome Res; 2003 Jan; 13(1):37-45. PubMed ID: 12529304 [TBL] [Abstract][Full Text] [Related]