78 related articles for article (PubMed ID: 17993676)
41. A memory efficient method for structure-based RNA multiple alignment.
DeBlasio D; Bruand J; Zhang S
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):1-11. PubMed ID: 21576754
[TBL] [Abstract][Full Text] [Related]
42. MISHIMA--a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data.
Kryukov K; Saitou N
BMC Bioinformatics; 2010 Mar; 11():142. PubMed ID: 20298584
[TBL] [Abstract][Full Text] [Related]
43. NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences.
Khelik K; Lagesen K; Sandve GK; Rognes T; Nederbragt AJ
BMC Bioinformatics; 2017 Jul; 18(1):338. PubMed ID: 28701187
[TBL] [Abstract][Full Text] [Related]
44. WebACT: an online genome comparison suite.
Abbott JC; Aanensen DM; Bentley SD
Methods Mol Biol; 2007; 395():57-74. PubMed ID: 17993667
[TBL] [Abstract][Full Text] [Related]
45. A comprehensive comparison of multiple sequence alignment programs.
Thompson JD; Plewniak F; Poch O
Nucleic Acids Res; 1999 Jul; 27(13):2682-90. PubMed ID: 10373585
[TBL] [Abstract][Full Text] [Related]
46. GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality.
Wu TD; Reeder J; Lawrence M; Becker G; Brauer MJ
Methods Mol Biol; 2016; 1418():283-334. PubMed ID: 27008021
[TBL] [Abstract][Full Text] [Related]
47. NdPASA: a pairwise sequence alignment server for distantly related proteins.
Li W; Wang J; Feng JA
Bioinformatics; 2005 Oct; 21(19):3803-5. PubMed ID: 16105904
[TBL] [Abstract][Full Text] [Related]
48. Tcoffee@igs: A web server for computing, evaluating and combining multiple sequence alignments.
Poirot O; O'Toole E; Notredame C
Nucleic Acids Res; 2003 Jul; 31(13):3503-6. PubMed ID: 12824354
[TBL] [Abstract][Full Text] [Related]
49. GenomeCons: a web server for manipulating multiple genome sequence alignments and their consensus sequences.
Sato T; Suyama M
Bioinformatics; 2015 Apr; 31(8):1293-5. PubMed ID: 25480378
[TBL] [Abstract][Full Text] [Related]
50. Pairwise alignment with rearrangements.
Vinh le S; Varón A; Wheeler WC
Genome Inform; 2006; 17(2):141-51. PubMed ID: 17503387
[TBL] [Abstract][Full Text] [Related]
51. GeneSeqer@PlantGDB: Gene structure prediction in plant genomes.
Schlueter SD; Dong Q; Brendel V
Nucleic Acids Res; 2003 Jul; 31(13):3597-600. PubMed ID: 12824374
[TBL] [Abstract][Full Text] [Related]
52. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
Ferrè F; Ponty Y; Lorenz WA; Clote P
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
[TBL] [Abstract][Full Text] [Related]
53. ABC: software for interactive browsing of genomic multiple sequence alignment data.
Cooper GM; Singaravelu SA; Sidow A
BMC Bioinformatics; 2004 Dec; 5():192. PubMed ID: 15588288
[TBL] [Abstract][Full Text] [Related]
54. DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment.
Subramanian AR; Weyer-Menkhoff J; Kaufmann M; Morgenstern B
BMC Bioinformatics; 2005 Mar; 6():66. PubMed ID: 15784139
[TBL] [Abstract][Full Text] [Related]
55. Base-By-Base: single nucleotide-level analysis of whole viral genome alignments.
Brodie R; Smith AJ; Roper RL; Tcherepanov V; Upton C
BMC Bioinformatics; 2004 Jul; 5():96. PubMed ID: 15253776
[TBL] [Abstract][Full Text] [Related]
56. MATRAS: A program for protein 3D structure comparison.
Kawabata T
Nucleic Acids Res; 2003 Jul; 31(13):3367-9. PubMed ID: 12824329
[TBL] [Abstract][Full Text] [Related]
57. T-Coffee: A novel method for fast and accurate multiple sequence alignment.
Notredame C; Higgins DG; Heringa J
J Mol Biol; 2000 Sep; 302(1):205-17. PubMed ID: 10964570
[TBL] [Abstract][Full Text] [Related]
58. Parallelization of a local similarity algorithm.
Huang X; Miller W; Schwartz S; Hardison RC
Comput Appl Biosci; 1992 Apr; 8(2):155-65. PubMed ID: 1591611
[TBL] [Abstract][Full Text] [Related]
59. D-GENIES: dot plot large genomes in an interactive, efficient and simple way.
Cabanettes F; Klopp C
PeerJ; 2018; 6():e4958. PubMed ID: 29888139
[TBL] [Abstract][Full Text] [Related]
60. A basic analysis toolkit for biological sequences.
Giancarlo R; Siragusa A; Siragusa E; Utro F
Algorithms Mol Biol; 2007 Sep; 2():10. PubMed ID: 17877802
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]