These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

196 related articles for article (PubMed ID: 17999748)

  • 41. MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.
    Liu Y; Schmidt B; Maskell DL
    Bioinformatics; 2010 Aug; 26(16):1958-64. PubMed ID: 20576627
    [TBL] [Abstract][Full Text] [Related]  

  • 42. A new similarity measure among protein sequences.
    Wu KP; Lin HN; Sung TY; Hsu WL
    Proc IEEE Comput Soc Bioinform Conf; 2003; 2():347-52. PubMed ID: 16452810
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Automated functional classification of experimental and predicted protein structures.
    Wang K; Samudrala R
    BMC Bioinformatics; 2006 Jun; 7():278. PubMed ID: 16749925
    [TBL] [Abstract][Full Text] [Related]  

  • 44. A Shannon entropy-based filter detects high- quality profile-profile alignments in searches for remote homologues.
    Capriotti E; Fariselli P; Rossi I; Casadio R
    Proteins; 2004 Feb; 54(2):351-60. PubMed ID: 14696197
    [TBL] [Abstract][Full Text] [Related]  

  • 45. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
    Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
    BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Mismatch string kernels for discriminative protein classification.
    Leslie CS; Eskin E; Cohen A; Weston J; Noble WS
    Bioinformatics; 2004 Mar; 20(4):467-76. PubMed ID: 14990442
    [TBL] [Abstract][Full Text] [Related]  

  • 47. An iterative refinement algorithm for consistency based multiple structural alignment methods.
    Chen Y; Crippen GM
    Bioinformatics; 2006 Sep; 22(17):2087-93. PubMed ID: 16809393
    [TBL] [Abstract][Full Text] [Related]  

  • 48. The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs.
    Griffiths-Jones S; Bateman A
    Bioinformatics; 2002 Sep; 18(9):1243-9. PubMed ID: 12217916
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins.
    Yuan X; Bystroff C
    Bioinformatics; 2005 Apr; 21(7):1010-9. PubMed ID: 15531601
    [TBL] [Abstract][Full Text] [Related]  

  • 50. The WWWH of remote homolog detection: the state of the art.
    Fariselli P; Rossi I; Capriotti E; Casadio R
    Brief Bioinform; 2007 Mar; 8(2):78-87. PubMed ID: 17003074
    [TBL] [Abstract][Full Text] [Related]  

  • 51. MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information.
    Pei J; Grishin NV
    Nucleic Acids Res; 2006; 34(16):4364-74. PubMed ID: 16936316
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.
    Pascual-GarcĂ­a A; Abia D; Ortiz AR; Bastolla U
    PLoS Comput Biol; 2009 Mar; 5(3):e1000331. PubMed ID: 19325884
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Protein secondary structure prediction for a single-sequence using hidden semi-Markov models.
    Aydin Z; Altunbasak Y; Borodovsky M
    BMC Bioinformatics; 2006 Mar; 7():178. PubMed ID: 16571137
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Biclustering as a method for RNA local multiple sequence alignment.
    Wang S; Gutell RR; Miranker DP
    Bioinformatics; 2007 Dec; 23(24):3289-96. PubMed ID: 17921494
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Improved Hidden Markov Model training for multiple sequence alignment by a particle swarm optimization-evolutionary algorithm hybrid.
    Rasmussen TK; Krink T
    Biosystems; 2003 Nov; 72(1-2):5-17. PubMed ID: 14642655
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection.
    Jung I; Lee J; Lee SY; Kim D
    BMC Bioinformatics; 2008 Jul; 9():298. PubMed ID: 18590572
    [TBL] [Abstract][Full Text] [Related]  

  • 57. APDB: a web server to evaluate the accuracy of sequence alignments using structural information.
    Armougom F; Poirot O; Moretti S; Higgins DG; Bucher P; Keduas V; Notredame C
    Bioinformatics; 2006 Oct; 22(19):2439-40. PubMed ID: 17032685
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Alignment of multiple proteins with an ensemble of hidden Markov models.
    Song J; Liu C; Song Y; Qu J; Hura GS
    Int J Data Min Bioinform; 2010; 4(1):60-71. PubMed ID: 20376922
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Quality of alignment comparison by COMPASS improves with inclusion of diverse confident homologs.
    Sadreyev RI; Grishin NV
    Bioinformatics; 2004 Apr; 20(6):818-28. PubMed ID: 14751996
    [TBL] [Abstract][Full Text] [Related]  

  • 60. pHMM-tree: phylogeny of profile hidden Markov models.
    Huo L; Zhang H; Huo X; Yang Y; Li X; Yin Y
    Bioinformatics; 2017 Apr; 33(7):1093-1095. PubMed ID: 28062446
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.