These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
259 related articles for article (PubMed ID: 18006547)
1. TMBpro: secondary structure, beta-contact and tertiary structure prediction of transmembrane beta-barrel proteins. Randall A; Cheng J; Sweredoski M; Baldi P Bioinformatics; 2008 Feb; 24(4):513-20. PubMed ID: 18006547 [TBL] [Abstract][Full Text] [Related]
2. transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels. Waldispühl J; Berger B; Clote P; Steyaert JM Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W189-93. PubMed ID: 16844989 [TBL] [Abstract][Full Text] [Related]
3. Predicting transmembrane beta-barrels and interstrand residue interactions from sequence. Waldispühl J; Berger B; Clote P; Steyaert JM Proteins; 2006 Oct; 65(1):61-74. PubMed ID: 16858668 [TBL] [Abstract][Full Text] [Related]
5. Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method. Bagos PG; Liakopoulos TD; Hamodrakas SJ BMC Bioinformatics; 2005 Jan; 6():7. PubMed ID: 15647112 [TBL] [Abstract][Full Text] [Related]
6. A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins. Bagos PG; Liakopoulos TD; Spyropoulos IC; Hamodrakas SJ BMC Bioinformatics; 2004 Mar; 5():29. PubMed ID: 15070403 [TBL] [Abstract][Full Text] [Related]
7. TMB-Hunt: an amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins. Garrow AG; Agnew A; Westhead DR BMC Bioinformatics; 2005 Mar; 6():56. PubMed ID: 15769290 [TBL] [Abstract][Full Text] [Related]
8. Prediction of membrane spanning segments and topology in beta-barrel membrane proteins at better accuracy. Ou YY; Chen SA; Gromiha MM J Comput Chem; 2010 Jan; 31(1):217-23. PubMed ID: 19421989 [TBL] [Abstract][Full Text] [Related]
9. TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins. Garrow AG; Agnew A; Westhead DR Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W188-92. PubMed ID: 15980452 [TBL] [Abstract][Full Text] [Related]
10. A method for discovering transmembrane beta-barrel proteins in Gram-negative bacterial proteomes. Hu J; Yan C Comput Biol Chem; 2008 Aug; 32(4):298-301. PubMed ID: 18467177 [TBL] [Abstract][Full Text] [Related]
11. Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods. Natt NK; Kaur H; Raghava GP Proteins; 2004 Jul; 56(1):11-8. PubMed ID: 15162482 [TBL] [Abstract][Full Text] [Related]
12. PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins. Bagos PG; Liakopoulos TD; Spyropoulos IC; Hamodrakas SJ Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W400-4. PubMed ID: 15215419 [TBL] [Abstract][Full Text] [Related]
13. Prediction of distant residue contacts with the use of evolutionary information. Vicatos S; Reddy BV; Kaznessis Y Proteins; 2005 Mar; 58(4):935-49. PubMed ID: 15645442 [TBL] [Abstract][Full Text] [Related]
14. Prediction of protein stability changes for single-site mutations using support vector machines. Cheng J; Randall A; Baldi P Proteins; 2006 Mar; 62(4):1125-32. PubMed ID: 16372356 [TBL] [Abstract][Full Text] [Related]
15. Combined prediction of transmembrane topology and signal peptide of beta-barrel proteins: using a hidden Markov model and genetic algorithms. Zou L; Wang Z; Wang Y; Hu F Comput Biol Med; 2010 Jul; 40(7):621-8. PubMed ID: 20488436 [TBL] [Abstract][Full Text] [Related]
16. Three-stage prediction of protein beta-sheets by neural networks, alignments and graph algorithms. Cheng J; Baldi P Bioinformatics; 2005 Jun; 21 Suppl 1():i75-84. PubMed ID: 15961501 [TBL] [Abstract][Full Text] [Related]
17. Online tools for predicting integral membrane proteins. Bigelow H; Rost B Methods Mol Biol; 2009; 528():3-23. PubMed ID: 19153681 [TBL] [Abstract][Full Text] [Related]
18. Improved identification of outer membrane beta barrel proteins using primary sequence, predicted secondary structure, and evolutionary information. Mizianty MJ; Kurgan L Proteins; 2011 Jan; 79(1):294-303. PubMed ID: 21064129 [TBL] [Abstract][Full Text] [Related]
19. Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers. Barenboim M; Masso M; Vaisman II; Jamison DC Proteins; 2008 Jun; 71(4):1930-9. PubMed ID: 18186470 [TBL] [Abstract][Full Text] [Related]
20. A consensus algorithm to screen genomes for novel families of transmembrane beta barrel proteins. Garrow AG; Westhead DR Proteins; 2007 Oct; 69(1):8-18. PubMed ID: 17557332 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]