158 related articles for article (PubMed ID: 18023020)
1. Cluster analysis of hydration waters around the active sites of bacterial alanine racemase using a 2-ns MD simulation.
Huang HC; Jupiter D; Qiu M; Briggs JM; Vanburen V
Biopolymers; 2008 Mar; 89(3):210-9. PubMed ID: 18023020
[TBL] [Abstract][Full Text] [Related]
2. Molecular dynamics studies of alanine racemase: a structural model for drug design.
Mustata GI; Soares TA; Briggs JM
Biopolymers; 2003 Oct; 70(2):186-200. PubMed ID: 14517907
[TBL] [Abstract][Full Text] [Related]
3. Cluster analysis of water molecules in alanine racemase and their putative structural role.
Mustata G; Briggs JM
Protein Eng Des Sel; 2004 Mar; 17(3):223-34. PubMed ID: 15115851
[TBL] [Abstract][Full Text] [Related]
4. Reaction of alanine racemase with 1-aminoethylphosphonic acid forms a stable external aldimine.
Stamper GF; Morollo AA; Ringe D
Biochemistry; 1998 Jul; 37(29):10438-45. PubMed ID: 9671513
[TBL] [Abstract][Full Text] [Related]
5. Understanding catalytic specificity in alanine racemase from quantum mechanical and molecular mechanical simulations of the arginine 219 mutant.
Rubinstein A; Major DT
Biochemistry; 2010 May; 49(18):3957-64. PubMed ID: 20394349
[TBL] [Abstract][Full Text] [Related]
6. A connected-cluster of hydration around myoglobin: correlation between molecular dynamics simulations and experiment.
Lounnas V; Pettitt BM
Proteins; 1994 Feb; 18(2):133-47. PubMed ID: 8159663
[TBL] [Abstract][Full Text] [Related]
7. The 1.9 A crystal structure of alanine racemase from Mycobacterium tuberculosis contains a conserved entryway into the active site.
LeMagueres P; Im H; Ebalunode J; Strych U; Benedik MJ; Briggs JM; Kohn H; Krause KL
Biochemistry; 2005 Feb; 44(5):1471-81. PubMed ID: 15683232
[TBL] [Abstract][Full Text] [Related]
8. Static and dynamic water molecules in Cu,Zn superoxide dismutase.
Falconi M; Brunelli M; Pesce A; Ferrario M; Bolognesi M; Desideri A
Proteins; 2003 Jun; 51(4):607-15. PubMed ID: 12784219
[TBL] [Abstract][Full Text] [Related]
9. A side reaction of alanine racemase: transamination of cycloserine.
Fenn TD; Stamper GF; Morollo AA; Ringe D
Biochemistry; 2003 May; 42(19):5775-83. PubMed ID: 12741835
[TBL] [Abstract][Full Text] [Related]
10. Determination of the structure of alanine racemase from Bacillus stearothermophilus at 1.9-A resolution.
Shaw JP; Petsko GA; Ringe D
Biochemistry; 1997 Feb; 36(6):1329-42. PubMed ID: 9063881
[TBL] [Abstract][Full Text] [Related]
11. Exploring the conserved water site and hydration of a coiled-coil trimerisation motif: a MD simulation study.
Dolenc J; Baron R; Missimer JH; Steinmetz MO; van Gunsteren WF
Chembiochem; 2008 Jul; 9(11):1749-56. PubMed ID: 18553323
[TBL] [Abstract][Full Text] [Related]
12. Structure of a Michaelis complex analogue: propionate binds in the substrate carboxylate site of alanine racemase.
Morollo AA; Petsko GA; Ringe D
Biochemistry; 1999 Mar; 38(11):3293-301. PubMed ID: 10079072
[TBL] [Abstract][Full Text] [Related]
13. Transition state stabilization and alpha-amino carbon acidity in alanine racemase.
Major DT; Nam K; Gao J
J Am Chem Soc; 2006 Jun; 128(25):8114-5. PubMed ID: 16787057
[TBL] [Abstract][Full Text] [Related]
14. Computational study of IAG-nucleoside hydrolase: determination of the preferred ground state conformation and the role of active site residues.
Mazumder-Shivakumar D; Bruice TC
Biochemistry; 2005 May; 44(21):7805-17. PubMed ID: 15909995
[TBL] [Abstract][Full Text] [Related]
15. Reaction mechanism of alanine racemase from Bacillus stearothermophilus: x-ray crystallographic studies of the enzyme bound with N-(5'-phosphopyridoxyl)alanine.
Watanabe A; Yoshimura T; Mikami B; Hayashi H; Kagamiyama H; Esaki N
J Biol Chem; 2002 May; 277(21):19166-72. PubMed ID: 11886871
[TBL] [Abstract][Full Text] [Related]
16. Crystal water dynamics of guanosine dihydrate: analysis of atomic displacement parameters, time profile of hydrogen-bonding probability, and translocation of water by MD simulation.
Yoneda S; Sugawara Y; Urabe H
J Phys Chem B; 2005 Jan; 109(3):1304-12. PubMed ID: 16851095
[TBL] [Abstract][Full Text] [Related]
17. Insights into activation and RNA binding of trp RNA-binding attenuation protein (TRAP) through all-atom simulations.
Murtola T; Vattulainen I; Falck E
Proteins; 2008 Jun; 71(4):1995-2011. PubMed ID: 18186477
[TBL] [Abstract][Full Text] [Related]
18. Crystal structure at 1.45 A resolution of alanine racemase from a pathogenic bacterium, Pseudomonas aeruginosa, contains both internal and external aldimine forms.
LeMagueres P; Im H; Dvorak A; Strych U; Benedik M; Krause KL
Biochemistry; 2003 Dec; 42(50):14752-61. PubMed ID: 14674749
[TBL] [Abstract][Full Text] [Related]
19. A structure-based design approach for the identification of novel inhibitors: application to an alanine racemase.
Mustata GI; Briggs JM
J Comput Aided Mol Des; 2002 Dec; 16(12):935-53. PubMed ID: 12825624
[TBL] [Abstract][Full Text] [Related]
20. Conversion of a PLP-dependent racemase into an aldolase by a single active site mutation.
Seebeck FP; Hilvert D
J Am Chem Soc; 2003 Aug; 125(34):10158-9. PubMed ID: 12926923
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
