BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

294 related articles for article (PubMed ID: 18024975)

  • 1. Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting.
    Ye K; Feenstra KA; Heringa J; Ijzerman AP; Marchiori E
    Bioinformatics; 2008 Jan; 24(1):18-25. PubMed ID: 18024975
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An iterative refinement algorithm for consistency based multiple structural alignment methods.
    Chen Y; Crippen GM
    Bioinformatics; 2006 Sep; 22(17):2087-93. PubMed ID: 16809393
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.
    Shah AR; Oehmen CS; Webb-Robertson BJ
    Bioinformatics; 2008 Mar; 24(6):783-90. PubMed ID: 18245127
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Predicting protein structure classes from function predictions.
    Sommer I; Rahnenführer J; Domingues FS; de Lichtenberg U; Lengauer T
    Bioinformatics; 2004 Mar; 20(5):770-6. PubMed ID: 14751994
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Automated discovery of 3D motifs for protein function annotation.
    Polacco BJ; Babbitt PC
    Bioinformatics; 2006 Mar; 22(6):723-30. PubMed ID: 16410325
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Support vector machines for prediction of dihedral angle regions.
    Zimmermann O; Hansmann UH
    Bioinformatics; 2006 Dec; 22(24):3009-15. PubMed ID: 17005536
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Multiple alignment by sequence annealing.
    Schwartz AS; Pachter L
    Bioinformatics; 2007 Jan; 23(2):e24-9. PubMed ID: 17237099
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Bayesian search of functionally divergent protein subgroups and their function specific residues.
    Marttinen P; Corander J; Törönen P; Holm L
    Bioinformatics; 2006 Oct; 22(20):2466-74. PubMed ID: 16870932
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Detecting protein dissimilarities in multiple alignments using Bayesian variable selection.
    Kim S; Tsai J; Kagiampakis I; LiWang P; Vannucci M
    Bioinformatics; 2007 Jan; 23(2):245-6. PubMed ID: 17105719
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J; Grishin NV
    Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A new progressive-iterative algorithm for multiple structure alignment.
    Lupyan D; Leo-Macias A; Ortiz AR
    Bioinformatics; 2005 Aug; 21(15):3255-63. PubMed ID: 15941743
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Semi-supervised protein classification using cluster kernels.
    Weston J; Leslie C; Ie E; Zhou D; Elisseeff A; Noble WS
    Bioinformatics; 2005 Aug; 21(15):3241-7. PubMed ID: 15905279
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A word-oriented approach to alignment validation.
    Beiko RG; Chan CX; Ragan MA
    Bioinformatics; 2005 May; 21(10):2230-9. PubMed ID: 15728118
    [TBL] [Abstract][Full Text] [Related]  

  • 14. HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences.
    Srivastava PK; Desai DK; Nandi S; Lynn AM
    BMC Bioinformatics; 2007 Mar; 8():104. PubMed ID: 17389042
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure.
    Song J; Yuan Z; Tan H; Huber T; Burrage K
    Bioinformatics; 2007 Dec; 23(23):3147-54. PubMed ID: 17942444
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Tracking repeats using significance and transitivity.
    Szklarczyk R; Heringa J
    Bioinformatics; 2004 Aug; 20 Suppl 1():i311-7. PubMed ID: 15262814
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS; Honig B
    J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs.
    Shamim MT; Anwaruddin M; Nagarajaram HA
    Bioinformatics; 2007 Dec; 23(24):3320-7. PubMed ID: 17989092
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences.
    Ye K; Kosters WA; Ijzerman AP
    Bioinformatics; 2007 Mar; 23(6):687-93. PubMed ID: 17237070
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Analysis and prediction of functional sub-types from protein sequence alignments.
    Hannenhalli SS; Russell RB
    J Mol Biol; 2000 Oct; 303(1):61-76. PubMed ID: 11021970
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.