151 related articles for article (PubMed ID: 18025005)
1. The SBML discrete stochastic models test suite.
Evans TW; Gillespie CS; Wilkinson DJ
Bioinformatics; 2008 Jan; 24(2):285-6. PubMed ID: 18025005
[TBL] [Abstract][Full Text] [Related]
2. The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology.
Blakes J; Twycross J; Romero-Campero FJ; Krasnogor N
Bioinformatics; 2011 Dec; 27(23):3323-4. PubMed ID: 21994219
[TBL] [Abstract][Full Text] [Related]
3. Design and implementation of a tool for translating SBML into the biochemical stochastic pi-calculus.
Eccher C; Priami C
Bioinformatics; 2006 Dec; 22(24):3075-81. PubMed ID: 17046974
[TBL] [Abstract][Full Text] [Related]
4. Tools for the SBML Community.
Gillespie CS; Wilkinson DJ; Proctor CJ; Shanley DP; Boys RJ; Kirkwood TB
Bioinformatics; 2006 Mar; 22(5):628-9. PubMed ID: 16410323
[TBL] [Abstract][Full Text] [Related]
5. Multiscale Hy3S: hybrid stochastic simulation for supercomputers.
Salis H; Sotiropoulos V; Kaznessis YN
BMC Bioinformatics; 2006 Feb; 7():93. PubMed ID: 16504125
[TBL] [Abstract][Full Text] [Related]
6. Stochastic reaction-diffusion simulation with MesoRD.
Hattne J; Fange D; Elf J
Bioinformatics; 2005 Jun; 21(12):2923-4. PubMed ID: 15817692
[TBL] [Abstract][Full Text] [Related]
7. Stochastic simulation GUI for biochemical networks.
Vallabhajosyula RR; Sauro HM
Bioinformatics; 2007 Jul; 23(14):1859-61. PubMed ID: 17586553
[TBL] [Abstract][Full Text] [Related]
8. Cyto-Sim: a formal language model and stochastic simulator of membrane-enclosed biochemical processes.
Sedwards S; Mazza T
Bioinformatics; 2007 Oct; 23(20):2800-2. PubMed ID: 17855418
[TBL] [Abstract][Full Text] [Related]
9. Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks.
Adalsteinsson D; McMillen D; Elston TC
BMC Bioinformatics; 2004 Mar; 5():24. PubMed ID: 15113411
[TBL] [Abstract][Full Text] [Related]
10. MONALISA for stochastic simulations of Petri net models of biochemical systems.
Balazki P; Lindauer K; Einloft J; Ackermann J; Koch I
BMC Bioinformatics; 2015 Jul; 16():215. PubMed ID: 26156221
[TBL] [Abstract][Full Text] [Related]
11. CaliBayes and BASIS: integrated tools for the calibration, simulation and storage of biological simulation models.
Chen Y; Lawless C; Gillespie CS; Wu J; Boys RJ; Wilkinson DJ
Brief Bioinform; 2010 May; 11(3):278-89. PubMed ID: 20056731
[TBL] [Abstract][Full Text] [Related]
12. Adaptive stochastic-deterministic chemical kinetic simulations.
Vasudeva K; Bhalla US
Bioinformatics; 2004 Jan; 20(1):78-84. PubMed ID: 14693812
[TBL] [Abstract][Full Text] [Related]
13. COPASI--a COmplex PAthway SImulator.
Hoops S; Sahle S; Gauges R; Lee C; Pahle J; Simus N; Singhal M; Xu L; Mendes P; Kummer U
Bioinformatics; 2006 Dec; 22(24):3067-74. PubMed ID: 17032683
[TBL] [Abstract][Full Text] [Related]
14. Meta-stochastic simulation of biochemical models for systems and synthetic biology.
Sanassy D; Widera P; Krasnogor N
ACS Synth Biol; 2015 Jan; 4(1):39-47. PubMed ID: 25152014
[TBL] [Abstract][Full Text] [Related]
15. STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB.
Klingbeil G; Erban R; Giles M; Maini PK
Bioinformatics; 2011 Apr; 27(8):1170-1. PubMed ID: 21357575
[TBL] [Abstract][Full Text] [Related]
16. Snoopy's hybrid simulator: a tool to construct and simulate hybrid biological models.
Herajy M; Liu F; Rohr C; Heiner M
BMC Syst Biol; 2017 Jul; 11(1):71. PubMed ID: 28754122
[TBL] [Abstract][Full Text] [Related]
17. CERENA: ChEmical REaction Network Analyzer--A Toolbox for the Simulation and Analysis of Stochastic Chemical Kinetics.
Kazeroonian A; Fröhlich F; Raue A; Theis FJ; Hasenauer J
PLoS One; 2016; 11(1):e0146732. PubMed ID: 26807911
[TBL] [Abstract][Full Text] [Related]
18. WGBSSuite: simulating whole-genome bisulphite sequencing data and benchmarking differential DNA methylation analysis tools.
Rackham OJ; Dellaportas P; Petretto E; Bottolo L
Bioinformatics; 2015 Jul; 31(14):2371-3. PubMed ID: 25777524
[TBL] [Abstract][Full Text] [Related]
19. Global synchronization control of general delayed discrete-time networks with stochastic coupling and disturbances.
Liang J; Wang Z; Liu Y; Liu X
IEEE Trans Syst Man Cybern B Cybern; 2008 Aug; 38(4):1073-83. PubMed ID: 18632398
[TBL] [Abstract][Full Text] [Related]
20. URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries.
Drawert B; Engblom S; Hellander A
BMC Syst Biol; 2012 Jun; 6():76. PubMed ID: 22727185
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
