129 related articles for article (PubMed ID: 18037683)
1. Identification of phylogenetically conserved microRNA cis-regulatory elements across 12 Drosophila species.
Wang X; Gu J; Zhang MQ; Li Y
Bioinformatics; 2008 Jan; 24(2):165-71. PubMed ID: 18037683
[TBL] [Abstract][Full Text] [Related]
2. Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.
Grad YH; Roth FP; Halfon MS; Church GM
Bioinformatics; 2004 Nov; 20(16):2738-50. PubMed ID: 15145800
[TBL] [Abstract][Full Text] [Related]
3. Regulatory circuit of human microRNA biogenesis.
Lee J; Li Z; Brower-Sinning R; John B
PLoS Comput Biol; 2007 Apr; 3(4):e67. PubMed ID: 17447837
[TBL] [Abstract][Full Text] [Related]
4. Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors.
Yu X; Lin J; Zack DJ; Qian J
BMC Bioinformatics; 2007 Nov; 8():437. PubMed ID: 17996093
[TBL] [Abstract][Full Text] [Related]
5. Inference of miRNA targets using evolutionary conservation and pathway analysis.
Gaidatzis D; van Nimwegen E; Hausser J; Zavolan M
BMC Bioinformatics; 2007 Mar; 8():69. PubMed ID: 17331257
[TBL] [Abstract][Full Text] [Related]
6. Regulatory conservation of protein coding and microRNA genes in vertebrates: lessons from the opossum genome.
Mahony S; Corcoran DL; Feingold E; Benos PV
Genome Biol; 2007; 8(5):R84. PubMed ID: 17506886
[TBL] [Abstract][Full Text] [Related]
7. Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution.
He X; Ling X; Sinha S
PLoS Comput Biol; 2009 Mar; 5(3):e1000299. PubMed ID: 19293946
[TBL] [Abstract][Full Text] [Related]
8. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.
Niu M; Tabari ES; Su Z
BMC Genomics; 2014 Dec; 15():1047. PubMed ID: 25442502
[TBL] [Abstract][Full Text] [Related]
9. Characterization and identification of microRNA core promoters in four model species.
Zhou X; Ruan J; Wang G; Zhang W
PLoS Comput Biol; 2007 Mar; 3(3):e37. PubMed ID: 17352530
[TBL] [Abstract][Full Text] [Related]
10. Identifications of conserved 7-mers in 3'-UTRs and microRNAs in Drosophila.
Gu J; Fu H; Zhang X; Li Y
BMC Bioinformatics; 2007 Nov; 8():432. PubMed ID: 17996040
[TBL] [Abstract][Full Text] [Related]
11. cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in Drosophila.
Yang TH; Wang CC; Hung PC; Wu WS
BMC Syst Biol; 2014; 8 Suppl 4(Suppl 4):S8. PubMed ID: 25521507
[TBL] [Abstract][Full Text] [Related]
12. Phylogeny based discovery of regulatory elements.
Gertz J; Fay JC; Cohen BA
BMC Bioinformatics; 2006 May; 7():266. PubMed ID: 16716228
[TBL] [Abstract][Full Text] [Related]
13. Conservation of regulatory elements between two species of Drosophila.
Emberly E; Rajewsky N; Siggia ED
BMC Bioinformatics; 2003 Nov; 4():57. PubMed ID: 14629780
[TBL] [Abstract][Full Text] [Related]
14. MicroRNA identification based on sequence and structure alignment.
Wang X; Zhang J; Li F; Gu J; He T; Zhang X; Li Y
Bioinformatics; 2005 Sep; 21(18):3610-4. PubMed ID: 15994192
[TBL] [Abstract][Full Text] [Related]
15. Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.
Stark A; Lin MF; Kheradpour P; Pedersen JS; Parts L; Carlson JW; Crosby MA; Rasmussen MD; Roy S; Deoras AN; Ruby JG; Brennecke J; ; ; Hodges E; Hinrichs AS; Caspi A; Paten B; Park SW; Han MV; Maeder ML; Polansky BJ; Robson BE; Aerts S; van Helden J; Hassan B; Gilbert DG; Eastman DA; Rice M; Weir M; Hahn MW; Park Y; Dewey CN; Pachter L; Kent WJ; Haussler D; Lai EC; Bartel DP; Hannon GJ; Kaufman TC; Eisen MB; Clark AG; Smith D; Celniker SE; Gelbart WM; Kellis M
Nature; 2007 Nov; 450(7167):219-32. PubMed ID: 17994088
[TBL] [Abstract][Full Text] [Related]
16. Identification of phylogenetically conserved sequence motifs in microRNA 5' flanking sites from C. elegans and C. briggsae.
Heikkinen L; Asikainen S; Wong G
BMC Mol Biol; 2008 Nov; 9():105. PubMed ID: 19036124
[TBL] [Abstract][Full Text] [Related]
17. cis-regulatory analysis of the Drosophila pdm locus reveals a diversity of neural enhancers.
Ross J; Kuzin A; Brody T; Odenwald WF
BMC Genomics; 2015 Sep; 16(1):700. PubMed ID: 26377945
[TBL] [Abstract][Full Text] [Related]
18. Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny.
Rouault H; Mazouni K; Couturier L; Hakim V; Schweisguth F
Proc Natl Acad Sci U S A; 2010 Aug; 107(33):14615-20. PubMed ID: 20671200
[TBL] [Abstract][Full Text] [Related]
19. Evaluating phylogenetic footprinting for human-rodent comparisons.
Sauer T; Shelest E; Wingender E
Bioinformatics; 2006 Feb; 22(4):430-7. PubMed ID: 16332706
[TBL] [Abstract][Full Text] [Related]
20. Comparative genomic analysis of allatostatin-encoding (Ast) genes in Drosophila species and prediction of regulatory elements by phylogenetic footprinting.
Bowser PR; Tobe SS
Peptides; 2007 Jan; 28(1):83-93. PubMed ID: 17175069
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
