154 related articles for article (PubMed ID: 18048163)
1. Phylogenetic analysis using complete signature information of whole genomes and clustered Neighbour-Joining method.
Wu X; Wan XF; Wu G; Xu D; Lin G
Int J Bioinform Res Appl; 2006; 2(3):219-48. PubMed ID: 18048163
[TBL] [Abstract][Full Text] [Related]
2. BPhyOG: an interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes.
Luo Y; Fu C; Zhang DY; Lin K
BMC Bioinformatics; 2007 Jul; 8():266. PubMed ID: 17650344
[TBL] [Abstract][Full Text] [Related]
3. Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer.
Bromberg R; Grishin NV; Otwinowski Z
PLoS Comput Biol; 2016 Jun; 12(6):e1004985. PubMed ID: 27336403
[TBL] [Abstract][Full Text] [Related]
4. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
Bastien O; Ortet P; Roy S; Maréchal E
BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
[TBL] [Abstract][Full Text] [Related]
5. ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets.
Lin GN; Cai Z; Lin G; Chakraborty S; Xu D
BMC Bioinformatics; 2009 Jan; 10 Suppl 1(Suppl 1):S5. PubMed ID: 19208152
[TBL] [Abstract][Full Text] [Related]
6. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
7. Bacterial molecular phylogeny using supertree approach.
Daubin V; Gouy M; Perrière G
Genome Inform; 2001; 12():155-64. PubMed ID: 11791234
[TBL] [Abstract][Full Text] [Related]
8. Reconstructing the Ancestral Relationships Between Bacterial Pathogen Genomes.
Collins C; Didelot X
Methods Mol Biol; 2017; 1535():109-137. PubMed ID: 27914076
[TBL] [Abstract][Full Text] [Related]
9. Bayesian inference of ancestral dates on bacterial phylogenetic trees.
Didelot X; Croucher NJ; Bentley SD; Harris SR; Wilson DJ
Nucleic Acids Res; 2018 Dec; 46(22):e134. PubMed ID: 30184106
[TBL] [Abstract][Full Text] [Related]
10. An improved model for whole genome phylogenetic analysis by Fourier transform.
Yin C; Yau SS
J Theor Biol; 2015 Oct; 382():99-110. PubMed ID: 26151589
[TBL] [Abstract][Full Text] [Related]
11. A new method to cluster DNA sequences using Fourier power spectrum.
Hoang T; Yin C; Zheng H; Yu C; Lucy He R; Yau SS
J Theor Biol; 2015 May; 372():135-45. PubMed ID: 25747773
[TBL] [Abstract][Full Text] [Related]
12. Phylogenomic networks.
Dagan T
Trends Microbiol; 2011 Oct; 19(10):483-91. PubMed ID: 21820313
[TBL] [Abstract][Full Text] [Related]
13. Nucleotide composition string selection in HIV-1 subtyping using whole genomes.
Wu X; Cai Z; Wan XF; Hoang T; Goebel R; Lin G
Bioinformatics; 2007 Jul; 23(14):1744-52. PubMed ID: 17495995
[TBL] [Abstract][Full Text] [Related]
14. Anchor-based whole genome phylogeny (ABWGP): a tool for inferring evolutionary relationship among closely related microorganisms [corrected].
Vishnoi A; Roy R; Prasad HK; Bhattacharya A
PLoS One; 2010 Nov; 5(11):e14159. PubMed ID: 21152403
[TBL] [Abstract][Full Text] [Related]
15. A New Method Based on Coding Sequence Density to Cluster Bacteria.
Sun N; Dong R; Pei S; Yin C; Yau SS
J Comput Biol; 2020 Dec; 27(12):1688-1698. PubMed ID: 32392428
[TBL] [Abstract][Full Text] [Related]
16. Phylogenetic relationships among mycoplasmas based on the whole genomic information.
Oshima K; Nishida H
J Mol Evol; 2007 Sep; 65(3):249-58. PubMed ID: 17687503
[TBL] [Abstract][Full Text] [Related]
17. Integrated gene and species phylogenies from unaligned whole genome protein sequences.
Stuart GW; Moffett K; Baker S
Bioinformatics; 2002 Jan; 18(1):100-8. PubMed ID: 11836217
[TBL] [Abstract][Full Text] [Related]
18. ezTree: an automated pipeline for identifying phylogenetic marker genes and inferring evolutionary relationships among uncultivated prokaryotic draft genomes.
Wu YW
BMC Genomics; 2018 Jan; 19(Suppl 1):921. PubMed ID: 29363425
[TBL] [Abstract][Full Text] [Related]
19. Exploration of phylogenetic data using a global sequence analysis method.
Chapus C; Dufraigne C; Edwards S; Giron A; Fertil B; Deschavanne P
BMC Evol Biol; 2005 Nov; 5():63. PubMed ID: 16280081
[TBL] [Abstract][Full Text] [Related]
20. A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history.
Daubin V; Gouy M; Perrière G
Genome Res; 2002 Jul; 12(7):1080-90. PubMed ID: 12097345
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]