97 related articles for article (PubMed ID: 18048397)
1. Möbius: an integrated discrete-event modeling environment.
Peccoud J; Courtney T; Sanders WH
Bioinformatics; 2007 Dec; 23(24):3412-4. PubMed ID: 18048397
[TBL] [Abstract][Full Text] [Related]
2. Cellware--a multi-algorithmic software for computational systems biology.
Dhar P; Meng TC; Somani S; Ye L; Sairam A; Chitre M; Hao Z; Sakharkar K
Bioinformatics; 2004 May; 20(8):1319-21. PubMed ID: 14871872
[TBL] [Abstract][Full Text] [Related]
3. Stochastic simulation GUI for biochemical networks.
Vallabhajosyula RR; Sauro HM
Bioinformatics; 2007 Jul; 23(14):1859-61. PubMed ID: 17586553
[TBL] [Abstract][Full Text] [Related]
4. libSRES: a C library for stochastic ranking evolution strategy for parameter estimation.
Ji X; Xu Y
Bioinformatics; 2006 Jan; 22(1):124-6. PubMed ID: 16267082
[TBL] [Abstract][Full Text] [Related]
5. 'On-the-fly' or 'generate-first' modeling?
Blinov ML; Faeder JR; Yang J; Goldstein B; Hlavacek WS
Nat Biotechnol; 2005 Nov; 23(11):1344-5; author reply 1345. PubMed ID: 16273053
[No Abstract] [Full Text] [Related]
6. Design and implementation of a tool for translating SBML into the biochemical stochastic pi-calculus.
Eccher C; Priami C
Bioinformatics; 2006 Dec; 22(24):3075-81. PubMed ID: 17046974
[TBL] [Abstract][Full Text] [Related]
7. SYCAMORE--a systems biology computational analysis and modeling research environment.
Weidemann A; Richter S; Stein M; Sahle S; Gauges R; Gabdoulline R; Surovtsova I; Semmelrock N; Besson B; Rojas I; Wade R; Kummer U
Bioinformatics; 2008 Jun; 24(12):1463-4. PubMed ID: 18463116
[TBL] [Abstract][Full Text] [Related]
8. Time accelerated Monte Carlo simulations of biological networks using the binomial tau-leap method.
Chatterjee A; Mayawala K; Edwards JS; Vlachos DG
Bioinformatics; 2005 May; 21(9):2136-7. PubMed ID: 15699024
[TBL] [Abstract][Full Text] [Related]
9. A multi-algorithm, multi-timescale method for cell simulation.
Takahashi K; Kaizu K; Hu B; Tomita M
Bioinformatics; 2004 Mar; 20(4):538-46. PubMed ID: 14990450
[TBL] [Abstract][Full Text] [Related]
10. Computational modeling of biochemical networks using COPASI.
Mendes P; Hoops S; Sahle S; Gauges R; Dada J; Kummer U
Methods Mol Biol; 2009; 500():17-59. PubMed ID: 19399433
[TBL] [Abstract][Full Text] [Related]
11. ENISI SDE: A New Web-Based Tool for Modeling Stochastic Processes.
Mei Y; Carbo A; Hoops S; Hontecillas R; Bassaganya-Riera J
IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(2):289-97. PubMed ID: 26357217
[TBL] [Abstract][Full Text] [Related]
12. Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks.
Adalsteinsson D; McMillen D; Elston TC
BMC Bioinformatics; 2004 Mar; 5():24. PubMed ID: 15113411
[TBL] [Abstract][Full Text] [Related]
13. Stochastic reaction-diffusion simulation with MesoRD.
Hattne J; Fange D; Elf J
Bioinformatics; 2005 Jun; 21(12):2923-4. PubMed ID: 15817692
[TBL] [Abstract][Full Text] [Related]
14. BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge.
Calzone L; Fages F; Soliman S
Bioinformatics; 2006 Jul; 22(14):1805-7. PubMed ID: 16672256
[TBL] [Abstract][Full Text] [Related]
15. Stochastic P systems and the simulation of biochemical processes with dynamic compartments.
Spicher A; Michel O; Cieslak M; Giavitto JL; Prusinkiewicz P
Biosystems; 2008 Mar; 91(3):458-72. PubMed ID: 17728055
[TBL] [Abstract][Full Text] [Related]
16. Automatic identification of model reductions for discrete stochastic simulation.
Wu S; Fu J; Li H; Petzold L
J Chem Phys; 2012 Jul; 137(3):034106. PubMed ID: 22830682
[TBL] [Abstract][Full Text] [Related]
17. Automatic generation of cellular reaction networks with Moleculizer 1.0.
Lok L; Brent R
Nat Biotechnol; 2005 Jan; 23(1):131-6. PubMed ID: 15637632
[TBL] [Abstract][Full Text] [Related]
18. Modelling metapopulations with stochastic membrane systems.
Besozzi D; Cazzaniga P; Pescini D; Mauri G
Biosystems; 2008 Mar; 91(3):499-514. PubMed ID: 17904729
[TBL] [Abstract][Full Text] [Related]
19. The Virtual Cell: a software environment for computational cell biology.
Loew LM; Schaff JC
Trends Biotechnol; 2001 Oct; 19(10):401-6. PubMed ID: 11587765
[TBL] [Abstract][Full Text] [Related]
20. GSEA-P: a desktop application for Gene Set Enrichment Analysis.
Subramanian A; Kuehn H; Gould J; Tamayo P; Mesirov JP
Bioinformatics; 2007 Dec; 23(23):3251-3. PubMed ID: 17644558
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
