BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

85 related articles for article (PubMed ID: 18052775)

  • 1. Protein local structure alignment under the discrete Fréchet distance.
    Zhu B
    J Comput Biol; 2007 Dec; 14(10):1343-51. PubMed ID: 18052775
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Protein chain pair simplification under the discrete Fréchet distance.
    Wylie T; Zhu B
    IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(6):1372-83. PubMed ID: 24407296
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Protein structure-structure alignment with discrete Fréchet distance.
    Jiang M; Xu Y; Zhu B
    J Bioinform Comput Biol; 2008 Feb; 6(1):51-64. PubMed ID: 18324745
    [TBL] [Abstract][Full Text] [Related]  

  • 4. On complexity of protein structure alignment problem under distance constraint.
    Poleksic A
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(2):511-6. PubMed ID: 22025757
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A parameterized algorithm for protein structure alignment.
    Xu J; Jiao F; Berger B
    J Comput Biol; 2007 Jun; 14(5):564-77. PubMed ID: 17683261
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Fast molecular shape matching using contact maps.
    Agarwal PK; Mustafa NH; Wang Y
    J Comput Biol; 2007 Mar; 14(2):131-43. PubMed ID: 17456012
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Algorithms for optimal protein structure alignment.
    Poleksic A
    Bioinformatics; 2009 Nov; 25(21):2751-6. PubMed ID: 19734152
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Searching protein three-dimensional structures in faster than linear time.
    Shibuya T
    J Comput Biol; 2010 Apr; 17(4):593-602. PubMed ID: 20426692
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Searching protein 3-D structures for optimal structure alignment using intelligent algorithms and data structures.
    Novosád T; Snášel V; Abraham A; Yang JY
    IEEE Trans Inf Technol Biomed; 2010 Nov; 14(6):1378-86. PubMed ID: 20876026
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Comparison of protein structures by multi-objective optimization.
    Chen L; Wu LY; Wang R; Wang Y; Zhang S; Zhang XS
    Genome Inform; 2005; 16(2):114-24. PubMed ID: 16901095
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Fast overlapping of protein contact maps by alignment of eigenvectors.
    Di Lena P; Fariselli P; Margara L; Vassura M; Casadio R
    Bioinformatics; 2010 Sep; 26(18):2250-8. PubMed ID: 20610612
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Finding All Longest Common Segments in Protein Structures Efficiently.
    Ng YK; Yin L; Ono H; Li SC
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(3):644-55. PubMed ID: 26357275
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Spatial codes and the hardness of string folding problems.
    Nayak A; Sinclair A; Zwick U
    J Comput Biol; 1999; 6(1):13-36. PubMed ID: 10223662
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Fast model-based protein homology detection without alignment.
    Hochreiter S; Heusel M; Obermayer K
    Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Empirical limits for template-based protein structure prediction: the CASP5 example.
    Contreras-Moreira B; Ezkurdia I; Tress ML; Valencia A
    FEBS Lett; 2005 Feb; 579(5):1203-7. PubMed ID: 15710414
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Approximate protein structural alignment in polynomial time.
    Kolodny R; Linial N
    Proc Natl Acad Sci U S A; 2004 Aug; 101(33):12201-6. PubMed ID: 15304646
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Remote homolog detection using local sequence-structure correlations.
    Hou Y; Hsu W; Lee ML; Bystroff C
    Proteins; 2004 Nov; 57(3):518-30. PubMed ID: 15382242
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Local feature frequency profile: a method to measure structural similarity in proteins.
    Choi IG; Kwon J; Kim SH
    Proc Natl Acad Sci U S A; 2004 Mar; 101(11):3797-802. PubMed ID: 14985506
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Local homology recognition and distance measures in linear time using compressed amino acid alphabets.
    Edgar RC
    Nucleic Acids Res; 2004; 32(1):380-5. PubMed ID: 14729922
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The URMS-RMS hybrid algorithm for fast and sensitive local protein structure alignment.
    Yona G; Kedem K
    J Comput Biol; 2005; 12(1):12-32. PubMed ID: 15725731
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.