257 related articles for article (PubMed ID: 18155242)
1. Determination of electrostatic interaction energies and protonation state populations in enzyme active sites.
Søndergaard CR; McIntosh LP; Pollastri G; Nielsen JE
J Mol Biol; 2008 Feb; 376(1):269-87. PubMed ID: 18155242
[TBL] [Abstract][Full Text] [Related]
2. Hydrogen bonding and catalysis: a novel explanation for how a single amino acid substitution can change the pH optimum of a glycosidase.
Joshi MD; Sidhu G; Pot I; Brayer GD; Withers SG; McIntosh LP
J Mol Biol; 2000 May; 299(1):255-79. PubMed ID: 10860737
[TBL] [Abstract][Full Text] [Related]
3. Dissecting the electrostatic interactions and pH-dependent activity of a family 11 glycosidase.
Joshi MD; Sidhu G; Nielsen JE; Brayer GD; Withers SG; McIntosh LP
Biochemistry; 2001 Aug; 40(34):10115-39. PubMed ID: 11513590
[TBL] [Abstract][Full Text] [Related]
4. Characterization of pKa values and titration shifts in the cytotoxic ribonuclease alpha-sarcin by NMR. Relationship between electrostatic interactions, structure, and catalytic function.
Pérez-Cañadillas JM; Campos-Olivas R; Lacadena J; Martínez del Pozo A; Gavilanes JG; Santoro J; Rico M; Bruix M
Biochemistry; 1998 Nov; 37(45):15865-76. PubMed ID: 9843392
[TBL] [Abstract][Full Text] [Related]
5. Analyzing enzymatic pH activity profiles and protein titration curves using structure-based pKa calculations and titration curve fitting.
Nielsen JE
Methods Enzymol; 2009; 454():233-58. PubMed ID: 19216929
[TBL] [Abstract][Full Text] [Related]
6. Long-range nature of the interactions between titratable groups in Bacillus agaradhaerens family 11 xylanase: pH titration of B. agaradhaerens xylanase.
Betz M; Löhr F; Wienk H; Rüterjans H
Biochemistry; 2004 May; 43(19):5820-31. PubMed ID: 15134456
[TBL] [Abstract][Full Text] [Related]
7. Structure, dynamics and electrostatics of the active site of glutaredoxin 3 from Escherichia coli: comparison with functionally related proteins.
Foloppe N; Sagemark J; Nordstrand K; Berndt KD; Nilsson L
J Mol Biol; 2001 Jul; 310(2):449-70. PubMed ID: 11428900
[TBL] [Abstract][Full Text] [Related]
8. pH-dependent pKa values in proteins--a theoretical analysis of protonation energies with practical consequences for enzymatic reactions.
Bombarda E; Ullmann GM
J Phys Chem B; 2010 Feb; 114(5):1994-2003. PubMed ID: 20088566
[TBL] [Abstract][Full Text] [Related]
9. Statistical criteria for the identification of protein active sites using Theoretical Microscopic Titration Curves.
Ko J; Murga LF; André P; Yang H; Ondrechen MJ; Williams RJ; Agunwamba A; Budil DE
Proteins; 2005 May; 59(2):183-95. PubMed ID: 15739204
[TBL] [Abstract][Full Text] [Related]
10. Dissecting structural and electrostatic interactions of charged groups in alpha-sarcin. An NMR study of some mutants involving the catalytic residues.
García-Mayoral MF; Pérez-Cañadillas JM; Santoro J; Ibarra-Molero B; Sanchez-Ruiz JM; Lacadena J; Martínez del Pozo A; Gavilanes JG; Rico M; Bruix M
Biochemistry; 2003 Nov; 42(45):13122-33. PubMed ID: 14609322
[TBL] [Abstract][Full Text] [Related]
11. Calculations of electrostatic interactions and pKas in the active site of Escherichia coli thioredoxin.
Dillet V; Dyson HJ; Bashford D
Biochemistry; 1998 Jul; 37(28):10298-306. PubMed ID: 9665738
[TBL] [Abstract][Full Text] [Related]
12. Investigations of Sso7d catalytic residues by NMR titration shifts and electrostatic calculations.
Consonni R; Arosio I; Belloni B; Fogolari F; Fusi P; Shehi E; Zetta L
Biochemistry; 2003 Feb; 42(6):1421-9. PubMed ID: 12578354
[TBL] [Abstract][Full Text] [Related]
13. Microscopic pKa values of Escherichia coli thioredoxin.
Chivers PT; Prehoda KE; Volkman BF; Kim BM; Markley JL; Raines RT
Biochemistry; 1997 Dec; 36(48):14985-91. PubMed ID: 9398223
[TBL] [Abstract][Full Text] [Related]
14. On the pH dependence of protein stability.
Yang AS; Honig B
J Mol Biol; 1993 May; 231(2):459-74. PubMed ID: 8510157
[TBL] [Abstract][Full Text] [Related]
15. Computational method for relative binding energies of enzyme-substrate complexes.
Zhang T; Koshland DE
Protein Sci; 1996 Feb; 5(2):348-56. PubMed ID: 8745413
[TBL] [Abstract][Full Text] [Related]
16. A mixed mechanistic-electrostatic model to explain pH dependence of glycosyl hydrolase enzyme activity.
Olivera-Nappa A; Andrews BA; Asenjo JA
Biotechnol Bioeng; 2004 Jun; 86(5):573-86. PubMed ID: 15129441
[TBL] [Abstract][Full Text] [Related]
17. Structural basis of perturbed pKa values of catalytic groups in enzyme active sites.
Harris TK; Turner GJ
IUBMB Life; 2002 Feb; 53(2):85-98. PubMed ID: 12049200
[TBL] [Abstract][Full Text] [Related]
18. Dissecting electrostatic interactions in Bacillus circulans xylanase through NMR-monitored pH titrations.
McIntosh LP; Naito D; Baturin SJ; Okon M; Joshi MD; Nielsen JE
J Biomol NMR; 2011 Sep; 51(1-2):5-19. PubMed ID: 21947911
[TBL] [Abstract][Full Text] [Related]
19. Titration_DB: storage and analysis of NMR-monitored protein pH titration curves.
Farrell D; Miranda ES; Webb H; Georgi N; Crowley PB; McIntosh LP; Nielsen JE
Proteins; 2010 Mar; 78(4):843-57. PubMed ID: 19899070
[TBL] [Abstract][Full Text] [Related]
20. Enzyme/non-enzyme discrimination and prediction of enzyme active site location using charge-based methods.
Bate P; Warwicker J
J Mol Biol; 2004 Jul; 340(2):263-76. PubMed ID: 15201051
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]