289 related articles for article (PubMed ID: 18166073)
21. Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.
Bergman CM; Kreitman M
Genome Res; 2001 Aug; 11(8):1335-45. PubMed ID: 11483574
[TBL] [Abstract][Full Text] [Related]
22. Annotation of cis-regulatory elements by identification, subclassification, and functional assessment of multispecies conserved sequences.
Hughes JR; Cheng JF; Ventress N; Prabhakar S; Clark K; Anguita E; De Gobbi M; de Jong P; Rubin E; Higgs DR
Proc Natl Acad Sci U S A; 2005 Jul; 102(28):9830-5. PubMed ID: 15998734
[TBL] [Abstract][Full Text] [Related]
23. Widely distributed noncoding purifying selection in the human genome.
Asthana S; Noble WS; Kryukov G; Grant CE; Sunyaev S; Stamatoyannopoulos JA
Proc Natl Acad Sci U S A; 2007 Jul; 104(30):12410-5. PubMed ID: 17640883
[TBL] [Abstract][Full Text] [Related]
24. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome.
Washietl S; Hofacker IL; Lukasser M; Hüttenhofer A; Stadler PF
Nat Biotechnol; 2005 Nov; 23(11):1383-90. PubMed ID: 16273071
[TBL] [Abstract][Full Text] [Related]
25. Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences.
Ababneh F; Jermiin LS; Ma C; Robinson J
Bioinformatics; 2006 May; 22(10):1225-31. PubMed ID: 16492684
[TBL] [Abstract][Full Text] [Related]
26. Statistical power of phylo-HMM for evolutionarily conserved element detection.
Fan X; Zhu J; Schadt EE; Liu JS
BMC Bioinformatics; 2007 Oct; 8():374. PubMed ID: 17919331
[TBL] [Abstract][Full Text] [Related]
27. Single-Base Resolution Map of Evolutionary Constraints and Annotation of Conserved Elements across Major Grass Genomes.
Liang P; Saqib HSA; Zhang X; Zhang L; Tang H
Genome Biol Evol; 2018 Feb; 10(2):473-488. PubMed ID: 29378032
[TBL] [Abstract][Full Text] [Related]
28. Localization and characterization of mouse-human alignments within the human genome. Does evolutionary conservation suggest functional importance?
Saluja SK; Kohane I
AMIA Annu Symp Proc; 2003; 2003():994. PubMed ID: 14728497
[TBL] [Abstract][Full Text] [Related]
29. Non-coding RNAs in Ciona intestinalis.
Missal K; Rose D; Stadler PF
Bioinformatics; 2005 Sep; 21 Suppl 2():ii77-8. PubMed ID: 16204130
[TBL] [Abstract][Full Text] [Related]
30. Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance.
Johnson DS; Davidson B; Brown CD; Smith WC; Sidow A
Genome Res; 2004 Dec; 14(12):2448-56. PubMed ID: 15545496
[TBL] [Abstract][Full Text] [Related]
31. Distribution and intensity of constraint in mammalian genomic sequence.
Cooper GM; Stone EA; Asimenos G; ; Green ED; Batzoglou S; Sidow A
Genome Res; 2005 Jul; 15(7):901-13. PubMed ID: 15965027
[TBL] [Abstract][Full Text] [Related]
32. The human noncoding genome defined by genetic diversity.
di Iulio J; Bartha I; Wong EHM; Yu HC; Lavrenko V; Yang D; Jung I; Hicks MA; Shah N; Kirkness EF; Fabani MM; Biggs WH; Ren B; Venter JC; Telenti A
Nat Genet; 2018 Mar; 50(3):333-337. PubMed ID: 29483654
[TBL] [Abstract][Full Text] [Related]
33. Highly conserved regulatory elements around the SHH gene may contribute to the maintenance of conserved synteny across human chromosome 7q36.3.
Goode DK; Snell P; Smith SF; Cooke JE; Elgar G
Genomics; 2005 Aug; 86(2):172-81. PubMed ID: 15939571
[TBL] [Abstract][Full Text] [Related]
34. Exploring the genesis and functions of Human Accelerated Regions sheds light on their role in human evolution.
Hubisz MJ; Pollard KS
Curr Opin Genet Dev; 2014 Dec; 29():15-21. PubMed ID: 25156517
[TBL] [Abstract][Full Text] [Related]
35. Comparative annotation of viral genomes with non-conserved gene structure.
de Groot S; Mailund T; Hein J
Bioinformatics; 2007 May; 23(9):1080-9. PubMed ID: 17341494
[TBL] [Abstract][Full Text] [Related]
36. Natural Selection and Functional Potentials of Human Noncoding Elements Revealed by Analysis of Next Generation Sequencing Data.
Jha P; Lu D; Xu S
PLoS One; 2015; 10(6):e0129023. PubMed ID: 26053627
[TBL] [Abstract][Full Text] [Related]
37. Comparative genomics: a tool to functionally annotate human DNA.
Cheng JF; Priest JR; Pennacchio LA
Methods Mol Biol; 2007; 366():229-51. PubMed ID: 17568128
[TBL] [Abstract][Full Text] [Related]
38. GATA: a graphic alignment tool for comparative sequence analysis.
Nix DA; Eisen MB
BMC Bioinformatics; 2005 Jan; 6():9. PubMed ID: 15655071
[TBL] [Abstract][Full Text] [Related]
39. An evaluation of information content as a metric for the inference of putative conserved noncoding regions in DNA sequences using a genetic algorithms approach.
Congdon CB; Aman JC; Nava GM; Gaskins HR; Mattingly CJ
IEEE/ACM Trans Comput Biol Bioinform; 2008; 5(1):1-14. PubMed ID: 18245871
[TBL] [Abstract][Full Text] [Related]
40. Natural selection beyond genes: Identification and analyses of evolutionarily conserved elements in the genome of the collared flycatcher (Ficedula albicollis).
Craig RJ; Suh A; Wang M; Ellegren H
Mol Ecol; 2018 Jan; 27(2):476-492. PubMed ID: 29226517
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
