BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

471 related articles for article (PubMed ID: 18178545)

  • 1. Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage.
    Yang Z; Nielsen R
    Mol Biol Evol; 2008 Mar; 25(3):568-79. PubMed ID: 18178545
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Large-scale analyses of synonymous substitution rates can be sensitive to assumptions about the process of mutation.
    Aris-Brosou S; Bielawski JP
    Gene; 2006 Aug; 378():58-64. PubMed ID: 16797879
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Selection intensity on preferred codons correlates with overall codon usage bias in Caenorhabditis remanei.
    Cutter AD; Charlesworth B
    Curr Biol; 2006 Oct; 16(20):2053-7. PubMed ID: 17055986
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Codon usage in mitochondrial genomes: distinguishing context-dependent mutation from translational selection.
    Jia W; Higgs PG
    Mol Biol Evol; 2008 Feb; 25(2):339-51. PubMed ID: 18048402
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Selective pressures at a codon-level predict deleterious mutations in human disease genes.
    Arbiza L; Duchi S; Montaner D; Burguet J; Pantoja-Uceda D; Pineda-Lucena A; Dopazo J; Dopazo H
    J Mol Biol; 2006 May; 358(5):1390-404. PubMed ID: 16584746
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Effect of strong directional selection on weakly selected mutations at linked sites: implication for synonymous codon usage.
    Kim Y
    Mol Biol Evol; 2004 Feb; 21(2):286-94. PubMed ID: 14660698
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Variation in synonymous codon use and DNA polymorphism within the Drosophila genome.
    Bierne N; Eyre-Walker A
    J Evol Biol; 2006 Jan; 19(1):1-11. PubMed ID: 16405571
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Gene expression and protein length influence codon usage and rates of sequence evolution in Populus tremula.
    Ingvarsson PK
    Mol Biol Evol; 2007 Mar; 24(3):836-44. PubMed ID: 17204548
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The role of context-dependent mutations in generating compositional and codon usage bias in grass chloroplast DNA.
    Morton BR
    J Mol Evol; 2003 May; 56(5):616-29. PubMed ID: 12698298
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Nucleotide substitution pattern in rice paralogues: implication for negative correlation between the synonymous substitution rate and codon usage bias.
    Shi X; Wang X; Li Z; Zhu Q; Tang W; Ge S; Luo J
    Gene; 2006 Jul; 376(2):199-206. PubMed ID: 16644142
    [TBL] [Abstract][Full Text] [Related]  

  • 11. DNA sequence evolution: the sounds of silence.
    Sharp PM; Averof M; Lloyd AT; Matassi G; Peden JF
    Philos Trans R Soc Lond B Biol Sci; 1995 Sep; 349(1329):241-7. PubMed ID: 8577834
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Estimating Gene Expression and Codon-Specific Translational Efficiencies, Mutation Biases, and Selection Coefficients from Genomic Data Alone.
    Gilchrist MA; Chen WC; Shah P; Landerer CL; Zaretzki R
    Genome Biol Evol; 2015 May; 7(6):1559-79. PubMed ID: 25977456
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Determinants of synonymous and nonsynonymous variability in three species of Drosophila.
    Haddrill PR; Zeng K; Charlesworth B
    Mol Biol Evol; 2011 May; 28(5):1731-43. PubMed ID: 21191087
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Why are translationally sub-optimal synonymous codons used in Escherichia coli?
    Smith NG; Eyre-Walker A
    J Mol Evol; 2001 Sep; 53(3):225-36. PubMed ID: 11523009
    [TBL] [Abstract][Full Text] [Related]  

  • 15. An empirical codon model for protein sequence evolution.
    Kosiol C; Holmes I; Goldman N
    Mol Biol Evol; 2007 Jul; 24(7):1464-79. PubMed ID: 17400572
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Likelihood-based clustering (LiBaC) for codon models, a method for grouping sites according to similarities in the underlying process of evolution.
    Bao L; Gu H; Dunn KA; Bielawski JP
    Mol Biol Evol; 2008 Sep; 25(9):1995-2007. PubMed ID: 18586695
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Intragenic Hill-Robertson interference influences selection intensity on synonymous mutations in Drosophila.
    Comeron JM; Guthrie TB
    Mol Biol Evol; 2005 Dec; 22(12):2519-30. PubMed ID: 16120803
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genetic robustness and selection at the protein level for synonymous codons.
    Archetti M
    J Evol Biol; 2006 Mar; 19(2):353-65. PubMed ID: 16599911
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Complex mutation and weak selection together determined the codon usage bias in bryophyte mitochondrial genomes.
    Wang B; Liu J; Jin L; Feng XY; Chen JQ
    J Integr Plant Biol; 2010 Dec; 52(12):1100-8. PubMed ID: 21106008
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Natural selection on synonymous and nonsynonymous mutations shapes patterns of polymorphism in Populus tremula.
    Ingvarsson PK
    Mol Biol Evol; 2010 Mar; 27(3):650-60. PubMed ID: 19837657
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 24.